Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,336,535 – 2,336,647 |
Length | 112 |
Max. P | 0.843497 |
Location | 2,336,535 – 2,336,647 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 67.25 |
Mean single sequence MFE | -29.99 |
Consensus MFE | -11.40 |
Energy contribution | -12.04 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.23 |
Mean z-score | -1.98 |
Structure conservation index | 0.38 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843497 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2336535 112 + 20766785 CUGGCCGGCGGAGGACAAACUUUUCGGUCACGAGACAAAAGGCGCAGAUAACAGCUAUGAAAA------CAGGAAGUUGCCCCAGGCCACCGACCAGUGCUGCCAAGGGAAACACCGA ((((.(((.((.((...((((((..((((....)))....(((..........))).......------)..))))))...))...)).))).)))).........((......)).. ( -28.30) >DroPse_CAF1 108569 96 + 1 AUUUCUGGCCAAAGAGAAACUUGUUGGCCGAAAGACAAAAGGCCUUGAUAACAGCUAUAAAAAAAAAAACAAAGAGCUGCCAGAGGC-ACUGUCCAG--------------------- .((((.((((((.(((...))).))))))))))((((....(((((.....(((((..................)))))...)))))-..))))...--------------------- ( -27.87) >DroEre_CAF1 100753 110 + 1 AUGGCCGGCGGAGGACAAACUUUUCGGGCGCAAGACAAAAGGCGCAGAUAACAGCUAUGAAAA------CAGGAAGUUGCCCCUGGCCACCGACGAAGGCUGC--CGGAAAACACUGA ....(((((((........((((((((.(....)......(((((........))........------((((........))))))).)))).)))).))))--))).......... ( -33.00) >DroYak_CAF1 97386 110 + 1 CUGGCCGGCGGAGGACAAACUUUUUG--UCCAGGACAAAAGGCGCAGAUAACAGCUAUGAAAA------CAGGAAGUUGCCCCAGGCCACCGACUAUUGGUGCGUAGGAAUGCACUGA .(((((((.((..(((...(((((((--((...))))))))).((........))........------......))).)))).))))).......(..((((((....))))))..) ( -32.90) >DroPer_CAF1 110863 96 + 1 AUUUCUGGCCAAAGAGAAACUUGUUGGCCGAAAGACAAAAGGCCUUGAUAACAGCUAUAAAAAAAAAAACAAAGAGCUGCCAGAGGC-ACUGUCCAG--------------------- .((((.((((((.(((...))).))))))))))((((....(((((.....(((((..................)))))...)))))-..))))...--------------------- ( -27.87) >consensus AUGGCCGGCGGAGGACAAACUUUUUGGCCGCAAGACAAAAGGCGCAGAUAACAGCUAUGAAAA______CAGGAAGUUGCCCCAGGCCACCGACCAG_G_UGC___GG_A__CAC_GA .(((((((((.....).(((((((((..(....)......(((..........))).............))))))))))))...)))))............................. (-11.40 = -12.04 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:22 2006