Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,253,059 – 1,253,173 |
Length | 114 |
Max. P | 0.816345 |
Location | 1,253,059 – 1,253,173 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.74 |
Mean single sequence MFE | -35.72 |
Consensus MFE | -29.23 |
Energy contribution | -29.60 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.07 |
Mean z-score | -1.91 |
Structure conservation index | 0.82 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.816345 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1253059 114 + 20766785 GGGCGCUGGCCAGGGAGCAAGAACAAAU-AGCUGAGCCAUACAC-----CGAUGUGGAACAAAACCAAUUCAGCGCUUUGCGUACAAAACGCAACUAAUGGCAAGCAGCAGCGGUACCCU (((..(((((......))..........-.((((.(((((....-----.((..(((.......)))..))......((((((.....))))))...)))))...))))..)))..))). ( -33.40) >DroSec_CAF1 4794 114 + 1 GGGCGCUGGCCAGGGAGCGAGAACAAAU-AGCUGAGCCAAACAC-----CGGUGUGGAACAAAACCAAUUCAGCGCUUUGCGUACAAAACGCAACUAAUGGCAAGCAGCAGCGGUACCCU (((..(((((......))..........-.((((.((((.....-----.(((((.(((.........))).)))))((((((.....))))))....))))...))))..)))..))). ( -33.90) >DroSim_CAF1 10918 114 + 1 GGGCGCUGGCCAGGGAGCGAGAACAAAU-AGCUGAGCCAAACAC-----CGAUGGGGAACAAAACCAAUUCAGCGCUUUGCGUACAAAACGCAACUAAUGGCAAGCAGCAGCGGUACCCU (((..(((((......))..........-.((((.((((.....-----.((..((........))...))......((((((.....))))))....))))...))))..)))..))). ( -32.90) >DroEre_CAF1 9050 119 + 1 GGGUGCCGGCCAAGGAGCGAGAACGAAUAAGCUGAGCCAUACACCACACCGAUGUGGAACAAUAACAAUUCAGCGCUUUGCGUAAAAA-CGCAACUAAUGGCAAGCAGCAACGGUACCCU ((((((((((......))............((((.(((((...(((((....)))))....................((((((....)-)))))...)))))...))))..)))))))). ( -42.70) >consensus GGGCGCUGGCCAGGGAGCGAGAACAAAU_AGCUGAGCCAAACAC_____CGAUGUGGAACAAAACCAAUUCAGCGCUUUGCGUACAAAACGCAACUAAUGGCAAGCAGCAGCGGUACCCU (((.((((((......))............((((.((((...........((..(((.......)))..))......((((((.....))))))....))))...))))..)))).))). (-29.23 = -29.60 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:08 2006