Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,977,852 – 11,977,943 |
Length | 91 |
Max. P | 0.984915 |
Location | 11,977,852 – 11,977,943 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 97.88 |
Mean single sequence MFE | -20.13 |
Consensus MFE | -19.41 |
Energy contribution | -19.27 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.04 |
Mean z-score | -1.40 |
Structure conservation index | 0.96 |
SVM decision value | 1.99 |
SVM RNA-class probability | 0.984915 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11977852 91 + 20766785 -CCGAGAGAGCAGCGAAAAUUGCAAUUAAGAUAAUUAUCUGGCAAAAGCAAAAGUGUAAAUCCUUUGCGCUCCAAGGAUUAUGCAACUGCAG -((..(.((((.(((((..((((.....((((....)))).))))..(((....)))......))))))))))..))....(((....))). ( -20.00) >DroSec_CAF1 29069 91 + 1 -UCGAGAGAGCAGCGAAAAUUGCAAUUAAGAUAAUUAUCUGGCAAAAGCAAAAGUGUAAAUCCUUUGCGCUCCAAGGAUUAUGCAACUGCAG -((....))((((......((((.....((((....)))).)))).........(((((((((((........))))))).)))).)))).. ( -20.50) >DroSim_CAF1 32588 91 + 1 -UCGAGAGAGCAGCGAAAAUUGCAAUUAAGAUAAUUAUCUGGCAAAAGCAAAAGUGUAAAUCCUUUGCGCUCCAAGGAUUAUGCAACUGCAG -((....))((((......((((.....((((....)))).)))).........(((((((((((........))))))).)))).)))).. ( -20.50) >DroEre_CAF1 29399 91 + 1 -UCGAGAGAGCAGCGAAAAUUGCAAUUAAGAUAAUUAUCUGGCAAAAGCAAAAGUGUAAAUCCUUUGCGCUCCAAGGAUUAUGCAACUGCAG -((....))((((......((((.....((((....)))).)))).........(((((((((((........))))))).)))).)))).. ( -20.50) >DroYak_CAF1 29771 91 + 1 -UCGAGAAAGCAGCGAAAAUUGCAAUUAAGAUAAUUAUCUGGCAAAAGCAAAAGUGUAAAUCCUUUGCGCUCCAAGGAUUAUGCAACUGCAG -........((((......((((.....((((....)))).)))).........(((((((((((........))))))).)))).)))).. ( -19.20) >DroAna_CAF1 30277 92 + 1 AGCGAGUGAGCAGCGAAAAUUGCAAUUAAGAUAAUUAUCUGGCAAAAGCAAAAGUGUAAAUCCUUUGCGCUCCGAGGAUUAUGCAACUGCAG .((.(((..(((((.....((((.....((((....)))).))))..)).........(((((((........))))))).))).))))).. ( -20.10) >consensus _UCGAGAGAGCAGCGAAAAUUGCAAUUAAGAUAAUUAUCUGGCAAAAGCAAAAGUGUAAAUCCUUUGCGCUCCAAGGAUUAUGCAACUGCAG .........((((......((((.....((((....)))).)))).........(((((((((((........))))))).)))).)))).. (-19.41 = -19.27 + -0.14)
Location | 11,977,852 – 11,977,943 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 97.88 |
Mean single sequence MFE | -18.38 |
Consensus MFE | -17.75 |
Energy contribution | -17.92 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.01 |
Structure conservation index | 0.97 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.876904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11977852 91 - 20766785 CUGCAGUUGCAUAAUCCUUGGAGCGCAAAGGAUUUACACUUUUGCUUUUGCCAGAUAAUUAUCUUAAUUGCAAUUUUCGCUGCUCUCUCGG- .(((....)))....((..((((((((((((.......)))))))..((((.((((....)))).....))))........)))))...))- ( -18.60) >DroSec_CAF1 29069 91 - 1 CUGCAGUUGCAUAAUCCUUGGAGCGCAAAGGAUUUACACUUUUGCUUUUGCCAGAUAAUUAUCUUAAUUGCAAUUUUCGCUGCUCUCUCGA- ..(((((((...(((((((........)))))))..))...((((..(((..((((....)))))))..)))).....)))))........- ( -18.30) >DroSim_CAF1 32588 91 - 1 CUGCAGUUGCAUAAUCCUUGGAGCGCAAAGGAUUUACACUUUUGCUUUUGCCAGAUAAUUAUCUUAAUUGCAAUUUUCGCUGCUCUCUCGA- ..(((((((...(((((((........)))))))..))...((((..(((..((((....)))))))..)))).....)))))........- ( -18.30) >DroEre_CAF1 29399 91 - 1 CUGCAGUUGCAUAAUCCUUGGAGCGCAAAGGAUUUACACUUUUGCUUUUGCCAGAUAAUUAUCUUAAUUGCAAUUUUCGCUGCUCUCUCGA- ..(((((((...(((((((........)))))))..))...((((..(((..((((....)))))))..)))).....)))))........- ( -18.30) >DroYak_CAF1 29771 91 - 1 CUGCAGUUGCAUAAUCCUUGGAGCGCAAAGGAUUUACACUUUUGCUUUUGCCAGAUAAUUAUCUUAAUUGCAAUUUUCGCUGCUUUCUCGA- ..(((((((...(((((((........)))))))..))...((((..(((..((((....)))))))..)))).....)))))........- ( -18.30) >DroAna_CAF1 30277 92 - 1 CUGCAGUUGCAUAAUCCUCGGAGCGCAAAGGAUUUACACUUUUGCUUUUGCCAGAUAAUUAUCUUAAUUGCAAUUUUCGCUGCUCACUCGCU .((((((((.(((((..((((...(((((((.......))))))).....)).))..)))))..)))))))).........((......)). ( -18.50) >consensus CUGCAGUUGCAUAAUCCUUGGAGCGCAAAGGAUUUACACUUUUGCUUUUGCCAGAUAAUUAUCUUAAUUGCAAUUUUCGCUGCUCUCUCGA_ ..(((((((...(((((((........)))))))..))...((((..(((..((((....)))))))..)))).....)))))......... (-17.75 = -17.92 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:36 2006