Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,972,663 – 11,972,753 |
Length | 90 |
Max. P | 0.899957 |
Location | 11,972,663 – 11,972,753 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 78.32 |
Mean single sequence MFE | -27.82 |
Consensus MFE | -20.68 |
Energy contribution | -20.35 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.23 |
Mean z-score | -1.62 |
Structure conservation index | 0.74 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899957 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11972663 90 - 20766785 GACCC----------AGCUCACGG--------------CCCCAACUUCCAACUCGCAGCUGCCUUUGUUGCGGCAUAAAGGCGUUAUUAAUAUGCUUAUGUGCUGCGGAUC-GUU .....----------.....(((.--------------.((((..........((((((.......))))))(((((.((((((.......)))))).))))))).))..)-)). ( -26.50) >DroSec_CAF1 23831 90 - 1 GACCC----------AGCUCCCAG--------------CCCCAACUUCCAACUCGCAGCUGCCUUUGUUGCGGCAUAAAGGCGUUAUUAAUAUGCUUAUAUGCUGCGGAUC-GUU (((((----------((((.(.((--------------.............)).).)))))........((((((((.((((((.......)))))).)))))))))).))-... ( -25.52) >DroSim_CAF1 27430 97 - 1 GACCC----------AGCUCCCAGCU-------CCCAUCCCCAACUUCCAACUCGCAGCUGCCUUUGUUGCGGCAUAAAGGCGUUAUUAAUAUGCUUAUGUGCUGCGGAUC-GUU .....----------.(.(((((((.-------....................((((((.......))))))(((((..(((((.......)))))))))))))).))).)-... ( -25.70) >DroEre_CAF1 24023 114 - 1 GACCCAGCAGCUCCCGGCUCCCAGCUCCCAGCUCCCAGCCCCAACUUCCAACUCGCAGCUGCCUUUGUUGCGGCAUAAAGGCGUUAUUAAUAUGCUUAUGUGCUGCGGAUC-GUU ((.((.((((((...((((...(((.....)))...))))................)))))).......((((((((.((((((.......)))))).)))))))))).))-... ( -36.51) >DroYak_CAF1 24365 96 - 1 GACCC----------CGCUCCCAACUC-CAACUUCCAGC-------UCCAACUCGCAGCUGCCUUUGUUGCGGCAUAAAGGCGUUAUUAAUAUGCUUAUGUGCUGCGGAUC-GUU .....----------((.(((......-.(((...((((-------(.(.....).))))).....)))((((((((.((((((.......)))))).))))))))))).)-).. ( -28.50) >DroAna_CAF1 24777 86 - 1 GACCC----------AACUCUCCG--------------CUCCG---UACCGCUCGC--UCGGCUUUGUUGUGGCAUGAAGGCGUUAUUAAUAUGCUUAUGUGCCACGGAUCUGCU ((.((----------(((...(((--------------...((---.......)).--.)))....)))((((((((.((((((.......)))))).)))))))))).)).... ( -24.20) >consensus GACCC__________AGCUCCCAG______________CCCCAACUUCCAACUCGCAGCUGCCUUUGUUGCGGCAUAAAGGCGUUAUUAAUAUGCUUAUGUGCUGCGGAUC_GUU ..............................................((((((..((....))....)))((((((((.((((((.......)))))).)))))))))))...... (-20.68 = -20.35 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:30 2006