Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,970,441 – 11,970,556 |
Length | 115 |
Max. P | 0.998200 |
Location | 11,970,441 – 11,970,556 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 98.38 |
Mean single sequence MFE | -24.11 |
Consensus MFE | -23.11 |
Energy contribution | -23.08 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.07 |
Mean z-score | -1.88 |
Structure conservation index | 0.96 |
SVM decision value | 3.03 |
SVM RNA-class probability | 0.998200 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11970441 115 - 20766785 AUAAAUAUUCAGUGGCCAUUAAAUGCAGUUAUACAUAUUAAAAAUUUGUACUGCAUUUGUGAUUUUUUGCAUUUUGUCUGUGGCAAAUAAAUAUUUGAUUGCCCAUUUGUCACAC ...........((((((((.(((((((((...(((...........))))))))))))))).................((.(((((.(((....))).)))))))...))))).. ( -24.30) >DroSec_CAF1 21699 115 - 1 AUAAAUAUUCAGUGGCCAUUAAAUGCAGUUAUACAUAUUAAAAAUUUGUACUGCAUUUGUGAUUUUUUGCAUUUUGUCUGUGGCAAAUAAAUAUUUGAUUGCCCAUUUGUCACAC ...........((((((((.(((((((((...(((...........))))))))))))))).................((.(((((.(((....))).)))))))...))))).. ( -24.30) >DroSim_CAF1 25200 115 - 1 AUAAAUAUUCAGUGGCCAUUAAAUGCAGUUAUACAUAUUAAAAAUUUGUACUGCAUUUGUGAUUUUUUGCAUUUUGUCUGUGGCAAAUAAAUAUUUGAUUGCCCAUUUGUCACAC ...........((((((((.(((((((((...(((...........))))))))))))))).................((.(((((.(((....))).)))))))...))))).. ( -24.30) >DroEre_CAF1 21839 115 - 1 AUAAAUAUUCAGUGGCCAUUAAAUGCAGUUAUACAUAUUAAAAUUUUGUACAGCACUUGUGAUUUUUUGCAUUUUGUCUGUGGCAAAUAAAUAUUUGAUUGCCCAUUUGUCACAC ...........(((((........(((((((...(((((.....(((((((((((..((..(....)..))...)).)))).)))))..))))).)))))))......))))).. ( -22.94) >DroYak_CAF1 22170 115 - 1 AUAAAUAUUCAGUGGCCAUUAAAUGCAGUUAUACAUAUUAAAAAUUUGUGCUGCAUUUGUGAUUUUUUGCAUUUUGUCUGUGGCAAAUAAAUAUUUGAUUGCCCAUUUGUCACAC ...........((((((((.(((((((((...(((...........))))))))))))))).................((.(((((.(((....))).)))))))...))))).. ( -24.60) >DroAna_CAF1 23057 115 - 1 AUAAAUAUUCAGUGGCUAUUAAAUGCAGUUAUACAUAUUAAAAAUUUGUGCUGCAUUUGUGAUUUUUUGCAUUUUGUCUGUGGCAAAUAAAUAUUUGAUUGCCCAUUUGUCACAC ...........(((((...((((((((((...(((...........)))))))))))))...................((.(((((.(((....))).)))))))...))))).. ( -24.20) >consensus AUAAAUAUUCAGUGGCCAUUAAAUGCAGUUAUACAUAUUAAAAAUUUGUACUGCAUUUGUGAUUUUUUGCAUUUUGUCUGUGGCAAAUAAAUAUUUGAUUGCCCAUUUGUCACAC ...........((((((((.(((((((((...(((...........))))))))))))))).................((.(((((.(((....))).)))))))...))))).. (-23.11 = -23.08 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:29 2006