Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,961,172 – 11,961,271 |
Length | 99 |
Max. P | 0.635728 |
Location | 11,961,172 – 11,961,271 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.85 |
Mean single sequence MFE | -36.34 |
Consensus MFE | -19.07 |
Energy contribution | -20.02 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.31 |
Mean z-score | -1.72 |
Structure conservation index | 0.52 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11961172 99 + 20766785 ----CAGUCAAAUG--CCGGCGAAAAGGAUCAGCUGGCGGCGUUUGGUGGCACUACUGCCGAAUUCGAUAGGUUUGUCAUUAAAA---------CCGGUGA------CACCUCAUUUGAG ----..((((...(--(((((((......)).))))))((..((((((((((...(((.((....)).)))...)))))))))).---------))..)))------)..(((....))) ( -31.80) >DroSec_CAF1 12483 99 + 1 ----CAGUCAAAUG--CCGGCGAAAAGGAUCAGCUGGCGGCGUUUGGCGGCACUACUGCCGAAUUCCAUAGGUCUGUCAUUAAAA---------CCGGUGA------CGCCUCAUUUGAG ----...(((((((--(((((((......)).))))))((.(((((((((.....))))))))).))..((((..((((((....---------..)))))------))))).)))))). ( -37.40) >DroSim_CAF1 15623 99 + 1 ----CAGUCAAAUG--CCGGCGAAAAGGAUCAGCUGGCGGCGUUUGGCGGCACUACUGCCGAAUUCCAUAGGUCUGUCAUUAAAA---------CCGGUGA------CGCCUCAUUUGAG ----...(((((((--(((((((......)).))))))((.(((((((((.....))))))))).))..((((..((((((....---------..)))))------))))).)))))). ( -37.40) >DroEre_CAF1 12613 99 + 1 ----CAGUCAAAUG--CCGGCGAAAAGGAUCAGCUGGCGGCGUUUGGUAUCACUGCUGCCGCAUUCCAUAGGACUGCCCAUAAAA---------GCGGUGA------CGCCCCAUUUGAG ----...(((((((--(((((((......)).))))))((.....((..((((((((...(((.(((...))).))).......)---------)))))))------..)))))))))). ( -36.30) >DroYak_CAF1 12643 99 + 1 ----CGCUCAAAUG--CCAGCGAAAAGGAUCAGCUGGCGGCGUUUGGUGGCACUACUGCCCCAUUCCAUAGGACUACCCAUAAAA---------GCGGUAA------CGCCUCAUUUGAG ----..((((((((--(((((((......)).))))))(((((.(((.((((....)))))))...........(((((......---------).)))))------))))..))))))) ( -37.00) >DroAna_CAF1 13053 120 + 1 UUCGCGCACAAAUCACUCCACGAAGCGGAUCAGUUGGCGGCGAUUGAUGUCGGUGCUGCCCAGCUCGAUUGUCCUGCCGCUGGGAUGUGCCCCACUGGCGAAAGCACCACUCGACUUGAA .((((((.(((.....(((.......)))....))))).))))((((.((.((((((.((((((..............))))))...((((.....))))..))))))))))))...... ( -38.14) >consensus ____CAGUCAAAUG__CCGGCGAAAAGGAUCAGCUGGCGGCGUUUGGUGGCACUACUGCCGAAUUCCAUAGGUCUGCCAUUAAAA_________CCGGUGA______CGCCUCAUUUGAG .......(((((((..(((((((......)).))))).((.(((((((((.....))))))))).)).............................((((.......)))).))))))). (-19.07 = -20.02 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:25 2006