Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,933,701 – 11,933,820 |
Length | 119 |
Max. P | 0.691169 |
Location | 11,933,701 – 11,933,820 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.68 |
Mean single sequence MFE | -43.75 |
Consensus MFE | -28.03 |
Energy contribution | -27.68 |
Covariance contribution | -0.35 |
Combinations/Pair | 1.38 |
Mean z-score | -2.31 |
Structure conservation index | 0.64 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11933701 119 - 20766785 CCUUCACGUUGGAGGAACGCCAGCGUUUGUGUAUCCAUGGACUCAUGCCGGCCUGCGUU-CGAACGUACGAUGAGCAGAUGUUGGCCAUCGAGUCCAACUUUCACUCCUUCGAAUCGAAU ..(((...(((((((((((....)))..(((......(((((((((((((((((((..(-((......)))...))))..))))).))).))))))).....)))))))))))...))). ( -42.10) >DroPse_CAF1 40633 119 - 1 AUUUCACCAUUGAAGAGCGGCAGAGCCUGCAGGUGCACGGCCUGUUUCCAGC-GGCGUUCCGCACCAUGCAGGAGCAGGUGUUCGCCGUUGCGGCAAACUUCCAUGCGCGUGCCACGAAA .(((((....))))).(.((((...((((((((((((((.((((....))).-).)))...))))).)))))).(((((.(((.((((...)))).)))..)).)))...)))).).... ( -47.10) >DroSec_CAF1 35236 119 - 1 CCUUCACUUUGGAGGAACGCCAGCGUUUGUGUAUCCAUGGACUCAUGCCGGCCUGCGUG-CGAACCUACGAUGAGCAGAUGCUGGCCAUCGAGUCCAACUUUCACUCCUUCGAAUCGAAU ..(((..((((((((((((....)))..(((......(((((((((((((((((((...-((......))....))))..))))).))).))))))).....))))))))))))..))). ( -43.30) >DroSim_CAF1 33153 119 - 1 CCUUCACUUUGGAGGAACGCCAGCGUUUGUGUAUCCAUGGACUCAUGCCGGCCUGCGUG-CGAACCUACGAUGAGCAGAUGCUGGCCAUCGAGUCCAACUUUCACUCCUUCGAAUCGAAU ..(((..((((((((((((....)))..(((......(((((((((((((((((((...-((......))....))))..))))).))).))))))).....))))))))))))..))). ( -43.30) >DroEre_CAF1 32510 119 - 1 CCUUCACAGUGGAGGAACGCCAGCGCCUGUGUAUCCAUGGACUCAUGCCGGCCUGCGUU-CGAACCUACGAUGAGCAGAUGCUGGCCAUCGAGUCCAACUUCCACUCCUUUGAAUCCAAU ..((((.(((((((((((((........)))).))).(((((((((((((((((((..(-((......)))...))))..))))).))).)))))))...))))))....))))...... ( -45.40) >DroYak_CAF1 33980 119 - 1 CCUUCACAUUGGAGGAGCGCCAGCGUUUGUGCAUCCAUGGACUCAUGCCGGCCUGCGUU-CGAACUUACGAUGAGCAGAUGCUGGCCAUCGAGACCAACUUUCACUCCUUCGAAUCGAAU ..(((...(((((((((.((((((((((((.((((...((((.((.(....).)).)))-)(......))))).))))))))))))....((((.....)))).)))))))))...))). ( -41.30) >consensus CCUUCACAUUGGAGGAACGCCAGCGUUUGUGUAUCCAUGGACUCAUGCCGGCCUGCGUU_CGAACCUACGAUGAGCAGAUGCUGGCCAUCGAGUCCAACUUUCACUCCUUCGAAUCGAAU (((((.....)))))...((((((((((((.((((...((....((((......))))......))...)))).))))))))))))..(((((...............)))))....... (-28.03 = -27.68 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:16 2006