Locus 3584

Sequence ID 2R_DroMel_CAF1
Location 11,931,647 – 11,931,756
Length 109
Max. P 0.679629
window5840

overview

Window 0

Location 11,931,647 – 11,931,756
Length 109
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 83.79
Mean single sequence MFE -43.60
Consensus MFE -33.45
Energy contribution -34.20
Covariance contribution 0.75
Combinations/Pair 1.17
Mean z-score -1.93
Structure conservation index 0.77
SVM decision value 0.30
SVM RNA-class probability 0.679629
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11931647 109 - 20766785
CUU--CUAGGGCCUUGCGUUCACCAUUAAGGAACGGCAACGUUUGGGCAUCAUGGGAUUGAUGCCCUGCUCCGUGCGCUCCAUGGAUGACCAGAUGAAUGCGGCCCUGGCG
...--((((((((..(((((((.(......(((((....)))))((((((((......))))))))...((((((.....))))))......).))))))))))))))).. ( -50.80)
>DroSec_CAF1 33190 109 - 1
CUU--CUAGGGCCUUGCGUUCACCAUUAAGGAACGGCAACGUUUGGGCAUCAUGGGAUUGAUGCCCUGCUCCGUGCGCUCCAUGGAUGACCAGAUGAAUGCCGCCCUGACG
...--.((((((...(((((((.(......(((((....)))))((((((((......))))))))...((((((.....))))))......).))))))).))))))... ( -45.40)
>DroSim_CAF1 31103 109 - 1
CUU--CUAGGGCCUUGCGUUCACCAUUAAGGAACGGCAACGUCUGGGCAUCAUGGGAUUGAUGCCCUGCUCCGUGCGCUCCAUGGAUGACCAGAUGAAUGCCGCCCUGACG
...--.((((((.....((((.(......)))))((((.(((((((((((((......))))))))...((((((.....)))))).....)))))..))))))))))... ( -43.90)
>DroEre_CAF1 30456 111 - 1
CUCGAAUAGGGUCUUGCCUUCAGCAUCAGGGAGCGGCAACGUCUGGGCAUCAUGGGAUUGAUGCCCUGCUCCGUGCGCUCCAUGGAUGAUCAGAUGAAUGCAGCCCAGGCG
........((((..(((.((((.((((..((((((.((.((...((((((((......)))))))).....))))))))))...))))......)))).)))))))..... ( -46.20)
>DroYak_CAF1 31934 111 - 1
CUCCAAUAGGGUCUUGCGUUCACCGUUAAUGAGCGGCAACGUCUGGGCAUCAUGGGAUUGAUGCCCUGCUCCGUGCGCACCAUGGAUGAUCAGAUGAAUGCAGCACAUGCC
..((....))((.((((((((.(((((....)))))....((((((((((((......))))))))...((((((.....)))))).....)))))))))))).))..... ( -39.60)
>DroAna_CAF1 57161 111 - 1
UUUGAUUAGGGUCUAGCUUUCACUAUCGAAGAGCGGCAACGCUUGGGCAUCCUUGGACUAUUUCCUGGCUCCGUGCGGACCAUGGAGGACCAGCUGUUCGCCGCCAAGGCC
...((.(((((((((((((((......)))(((((....))))).))).....)))))).....(((((((((((.....)))))))..))))))).))(((.....))). ( -35.70)
>consensus
CUU__CUAGGGCCUUGCGUUCACCAUUAAGGAACGGCAACGUCUGGGCAUCAUGGGAUUGAUGCCCUGCUCCGUGCGCUCCAUGGAUGACCAGAUGAAUGCCGCCCAGGCG
........((((...(((((((.(........(((....)))..((((((((......))))))))...((((((.....))))))......).))))))).))))..... (-33.45 = -34.20 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:12 2006