Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,918,142 – 11,918,243 |
Length | 101 |
Max. P | 0.633767 |
Location | 11,918,142 – 11,918,243 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.02 |
Mean single sequence MFE | -22.10 |
Consensus MFE | -4.58 |
Energy contribution | -5.78 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.20 |
Mean z-score | -1.66 |
Structure conservation index | 0.21 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633767 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11918142 101 - 20766785 CUAACUUAAC--CAUUAAAUGUUCAAGAGUGUAAUUUUG-----UG------------CUAAUGCAACGCAUAACAAUUACAUUGGCAAGCCAGAACAGUUAGAGUUUCUGGUUAAUAUU .....(((((--((((((.(((((...((((((((((((-----((------------(.........)))))).)))))))))((....)).))))).))))......))))))).... ( -25.30) >DroSec_CAF1 19815 106 - 1 CUAACUUAAC--CAUUAAAUGUUCAAGAGUGUAAUUCUGUUCUAUG------------CUAAUACAAAGCAUAAUAAUUACAUUGGCAAGCCAGAAUAGUUAGAGUUUCUGCUUAAUAAU ((((((....--........((((...(((((((((......((((------------((.......))))))..)))))))))((....)).))))))))))................. ( -17.40) >DroSim_CAF1 17750 106 - 1 CUAACUUAAC--CAUUAAAUGUUCAAGAGUGUAAUUCUGUUCUAUG------------CUAAUACAAAGCAUAGUAAUUACAUUGGCAAGCCAGAAUGGUUAGAGUUUCUGCUUAAUAAU ..((((((((--((((...........(((((((((.....(((((------------((.......))))))).)))))))))((....))..))))))).)))))............. ( -25.60) >DroEre_CAF1 16886 120 - 1 CUAACUGAUGCACAUUCAAUUUUCAAAGUGGCAAUUUUGUUCUAUGAAAGCAUUUAUAAUUACAUUGAGCAUAAUAAUUACAUUGGUAGGCCAGAAUUGUCCUCCUUUCUGCUUAAUAGU ......(((((...((((.....((((((....)))))).....)))).))))).........((((((((.((.....(((((((....))))...)))......)).))))))))... ( -19.40) >DroYak_CAF1 18006 108 - 1 CUAACUUAUGCACAUUCAAUUUUCAAAAUGGUAAUUUCGUUCUAUG------------CUUCCACUAAGCAUAAUAAUUACAUUGGCAGGCCGGAAUAGUUCUUGUUUCGGCUUUGUAAU ........(((.((((..........))))((((((......((((------------(((.....)))))))..))))))....)))(((((((((((...)))))))))))....... ( -22.80) >consensus CUAACUUAAC__CAUUAAAUGUUCAAGAGUGUAAUUUUGUUCUAUG____________CUAAUACAAAGCAUAAUAAUUACAUUGGCAAGCCAGAAUAGUUAGAGUUUCUGCUUAAUAAU ...................(((((......((((((((((.((........................)).)))).))))))..(((....))))))))...................... ( -4.58 = -5.78 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:06 2006