Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,911,802 – 11,911,899 |
Length | 97 |
Max. P | 0.818354 |
Location | 11,911,802 – 11,911,899 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 81.10 |
Mean single sequence MFE | -26.03 |
Consensus MFE | -12.22 |
Energy contribution | -12.38 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.07 |
Mean z-score | -2.42 |
Structure conservation index | 0.47 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818354 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11911802 97 - 20766785 CACAGC-GCGAAAGCGUUAAAAAAGCGAAUUGUAAAACAAGCAGCAAACAAACGAGCAACAUUCGCUCAUGGC--------UGGC----ACAACAGGACCCC-------CAUUUAGC ...(((-((....)))))......((...(((.....)))...))........((((.......))))((((.--------.((.----.(....)..)).)-------)))..... ( -22.80) >DroPse_CAF1 18213 95 - 1 CACAGC-GCGAAAGCGUUAAAAAAGUGAAUUGUAAAACAAGCAGCAAACAAACGAGCAACAUUUGCUAAGGGC--------UG---CAUGCCCCAGAAUU---------CA-AUAGC ...(((-((....))))).......((((((.(....((.(((((.........((((.....))))....))--------))---).))....).))))---------))-..... ( -24.82) >DroEre_CAF1 10654 104 - 1 CACAGC-GCGAAAGCGUUAAAAAAGCGAAUUGUAAAACAAGCAGCAAACAAACGAGCAACAUUCGCUCAGGGC--------UGGU----ACAACAGGACCCCCCGCCCUCAUUUAGC ...(((-((....)))))......((...(((.....)))...))........((((.......))))(((((--------((..----....))((.....)))))))........ ( -28.10) >DroAna_CAF1 37575 107 - 1 CACAGC-GCGAAAGCGUUAAAAAAGCGAAUUGUAAAACAAGCAGCAAACAAACGAGCAACAUUUGCUCAGGGCCUGGUUGCUGGUGCCUGCCACAGGAUACC-------CC--CGGC ...(((-((....)))))......((...(((.....)))...))........(((((.....)))))...(((.((.....((((((((...)))).))))-------))--.))) ( -32.40) >DroPer_CAF1 17310 96 - 1 CACAGCUGCGAAAGCGUUAAAAAAGUGAAUUGUAAAACAAGCAGCAAACAAACGAGCAACAUUUGCUAAGGGC--------UG---CAUGCCCCAGAAUU---------CA-AUAGC ....(((((....))..........((((((.(....((.(((((.........((((.....))))....))--------))---).))....).))))---------))-..))) ( -22.02) >consensus CACAGC_GCGAAAGCGUUAAAAAAGCGAAUUGUAAAACAAGCAGCAAACAAACGAGCAACAUUUGCUCAGGGC________UGG__C_UGCCACAGGAUCCC_______CA_AUAGC ...(((.((....)))))......((...(((.....)))...))........((((.......))))................................................. (-12.22 = -12.38 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:05 2006