| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,334,936 – 2,335,029 |
| Length | 93 |
| Max. P | 0.570444 |
| Location | 2,334,936 – 2,335,029 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 82.55 |
| Mean single sequence MFE | -25.77 |
| Consensus MFE | -17.61 |
| Energy contribution | -17.80 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570444 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2334936 93 - 20766785 ACACAAAGUCGCAGGCACACACACACAAACACACUCGUCUGAGUCCUGCAGGAAUCCUG---CUUUGCACACAUGUGUGCGUGUUCCAGGGAUACA---- .......(((.(.((.((((.((((((.....((((....))))...(((((...))))---)..........)))))).)))).)).).)))...---- ( -29.20) >DroSec_CAF1 107388 91 - 1 ACACAAAGUCGCAGGCACACACACAC--ACACACUCGUCUGAGUCCUGCAGGAAUCCUG---AUUUGCACACAUGUGUUCGUGUUCCAGGGAUACA---- .......((((((((.((.((.((..--........)).)).))))))).(((((..((---(...((((....))))))).)))))...)))...---- ( -21.10) >DroEre_CAF1 99106 86 - 1 ACACAAAGUCGCAGGCACACACACAC--A---------CUGAGUCCUGCAGGAAUCGCA---CUGGGCGCACAUGUGUGCGUGUUCCAGGGAUACACAGA .......(((.(.((.((((.(((((--(---------.((.(((((((.......)))---..)))).))..)))))).)))).)).).)))....... ( -28.30) >DroYak_CAF1 95672 94 - 1 ACACAAAGUCGUAGGCUCACACACAC--ACGCACUCGUCUGAGUCCUGCAGGAAUUUCAGUUCUACACACACAUGUGUGCGUGUUCCAGGGAUACA---- .......(((.(.((..(((.(((((--(.((((((....))))...)).(((((....))))).........)))))).)))..)).).)))...---- ( -24.50) >consensus ACACAAAGUCGCAGGCACACACACAC__ACACACUCGUCUGAGUCCUGCAGGAAUCCCA___CUUUGCACACAUGUGUGCGUGUUCCAGGGAUACA____ .......(((.(.((.((((....................((.(((....))).))..........(((((....))))))))).)).).)))....... (-17.61 = -17.80 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:19 2006