Locus 3578

Sequence ID 2R_DroMel_CAF1
Location 11,908,456 – 11,908,546
Length 90
Max. P 0.612616
window5831

overview

Window 1

Location 11,908,456 – 11,908,546
Length 90
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 74.65
Mean single sequence MFE -24.04
Consensus MFE -8.05
Energy contribution -9.25
Covariance contribution 1.20
Combinations/Pair 1.17
Mean z-score -2.20
Structure conservation index 0.34
SVM decision value 0.16
SVM RNA-class probability 0.612616
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11908456 90 - 20766785
ACCAACCCCAGAAAUUCACAAAGGACCC-GGGAAACACGACUGAAAAUUGAGAAAGAUUCGAAUUUUCGGAACUGUAUGGG-CUGAGGUGGU
((((.((.(((...(((.....)))(((-((....)....((((((((((((.....))).))))))))).......))))-))).)))))) ( -22.50)
>DroSec_CAF1 10186 90 - 1
ACCAACCCCAGAAAUCCACAAAGGACCC-GGGAAACAGGACUGAAAAUUGAGAAAGAUUCGAAUUUUCGGAACUGUAUGGG-GUGAAGGGGG
.....((((.....(((.....)))(((-(....((((..((((((((((((.....))).)))))))))..)))).))))-.....)))). ( -30.10)
>DroSim_CAF1 7356 90 - 1
ACCAACCCCAGAAAUCCACAAAGGACCC-GGGAAACACGACUGAAAAUUGAGAAAGAUUCGAAUUUUCGGAACUGUAUGGG-GUGAAGGGGG
.....((((.....(((.....)))(((-((....)....((((((((((((.....))).))))))))).......))))-.....)))). ( -25.90)
>DroEre_CAF1 7438 78 - 1
ACCAACCCC-GAAAUCCACAAAGGACCAAGGGAAACACGACUGAAAAUUGAGAAAGAUUCGAAUUUUCGUGGCUGGGUG-------------
.(((..(((-....(((.....)))....)))...(((((...(((.(((((.....))))).))))))))..)))...------------- ( -17.40)
>DroYak_CAF1 10274 78 - 1
ACCAACCCC-GAAAUCCACAAAGGACCCGGGGAAACACGGCUGAAAAUUGAGAAAGAUUCGAAUUUUCGGUGCUGGGGG-------------
.((..((((-(...(((.....)))..)))))...((..(((((((((((((.....))).))))))))))..))))..------------- ( -24.80)
>DroAna_CAF1 34038 76 - 1
ACCAUCCCUCGAA------AAAUGCGCC-GGGUU-GGGGAGUGAAAAUUGAGCAAGAUUCG-------GCGACUGAGUGUGGGUGUG-UGGG
.(((((((.((..------.....((((-(((((-..(.(((....)))...)..))))))-------)))......)).)))...)-))). ( -23.52)
>consensus
ACCAACCCCAGAAAUCCACAAAGGACCC_GGGAAACACGACUGAAAAUUGAGAAAGAUUCGAAUUUUCGGAACUGUAUGGG_GUGA___GGG
......(((.....(((.....)))....)))........((((((((((((.....)))).))))))))...................... ( -8.05 =  -9.25 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:03 2006