| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,904,639 – 11,904,751 |
| Length | 112 |
| Max. P | 0.964237 |
| Location | 11,904,639 – 11,904,751 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 95.83 |
| Mean single sequence MFE | -35.77 |
| Consensus MFE | -32.04 |
| Energy contribution | -31.60 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.03 |
| Mean z-score | -3.32 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.964237 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11904639 112 + 20766785 GUUUCUAUUUGCUAUUUGCUGGCUGUUUUUGCGAGCUGGCUUGUUGCUCUUUUGCUCUUUGGUCGUUUUUGGUUAGCCAACAUAGCCUGAAAUGGCCAAGCGUAGCAUACUU ..........((.((..((..(((((....)).)))..))..)).)).....(((((((((((((((((.(((((.......))))).)))))))))))).).))))..... ( -37.10) >DroSim_CAF1 3473 112 + 1 GUUUCUAUUUGCUAUUUUCUGGCUGUUUUUGCGAGCUGGCUUGUUGCUCUUUUGCUCUUUGGUCGUUUUCGGUUAGCCAACAUAGCCCGAAAUGGCCAAGCGUAGCAUACUU ..........((((.....))))((((..(((((((.(((.....))).....)))).(((((((((((.(((((.......))))).)))))))))))))).))))..... ( -33.00) >DroYak_CAF1 6255 112 + 1 GUUUCUAUUUUCUAUAUGCUGGGAGUUUUUGCGAGCUGGCUUGUUGCUCUUUUGCUCUUUGGUCGUUUUCGGUUAGCCAACAUAGCCUGAAAUGGCCAAGCGUAGCAUACUU ..............((((((((((((....(((((....))))).)))))...(((...((((((((((.(((((.......))))).))))))))))))).)))))))... ( -37.20) >consensus GUUUCUAUUUGCUAUUUGCUGGCUGUUUUUGCGAGCUGGCUUGUUGCUCUUUUGCUCUUUGGUCGUUUUCGGUUAGCCAACAUAGCCUGAAAUGGCCAAGCGUAGCAUACUU ..........((((.....)))).(((..(((((((.(((.....))).....)))).(((((((((((.(((((.......))))).)))))))))))))).)))...... (-32.04 = -31.60 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:02 2006