| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,899,909 – 11,900,013 |
| Length | 104 |
| Max. P | 0.970870 |
| Location | 11,899,909 – 11,900,013 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 68.67 |
| Mean single sequence MFE | -19.97 |
| Consensus MFE | -10.05 |
| Energy contribution | -9.50 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.50 |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.970870 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11899909 104 - 20766785 UUGUUCUUUCAGUGCACAGGAAAAAAUCCGAGGCACUGCAAAACAUAACAAAAUAUAUCUAUAC--CUUGUAAGCAAGUUCUUUUGAAACAACAAAUAUCCUACAA (((((.(((((((((...(((.....)))...)))))...........................--((((....)))).......)))).)))))........... ( -19.50) >DroSec_CAF1 1518 104 - 1 UUGUUCUUUCAGUGCACUGGAAAAAAUCCGAGGCACUGCAAAAUAUAACUAAAUAUUUCUGUAU--CUUGUAGCCAAGUUGUUUCGAAACAACAAAUAUUCCAGAA ................((((((.........(((..(((((.(((((............)))))--.))))))))..((((((....)))))).....)))))).. ( -22.00) >DroYak_CAF1 1555 93 - 1 UUGUUCUUUUAGUGCACAGGGAGAAAUUCGGGCCACUGCAAAAUAUUGCAAAUUAUGC-AAUAAUAAUAAUAAGAAUGUACAUCUUGAA------------UAGAA ((((((.....((((((((((.(.....)...)).))).....(((((((.....)))-)))).............))))).....)))------------))).. ( -18.40) >consensus UUGUUCUUUCAGUGCACAGGAAAAAAUCCGAGGCACUGCAAAAUAUAACAAAAUAUAUCUAUAA__CUUGUAAGCAAGUUCUUUUGAAACAACAAAUAU_CUAGAA .((((.((.((((((...(((.....)))...)))))).))))))............................................................. (-10.05 = -9.50 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:01 2006