Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,894,710 – 11,894,820 |
Length | 110 |
Max. P | 0.998897 |
Location | 11,894,710 – 11,894,820 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 93.77 |
Mean single sequence MFE | -34.75 |
Consensus MFE | -31.50 |
Energy contribution | -30.58 |
Covariance contribution | -0.92 |
Combinations/Pair | 1.14 |
Mean z-score | -1.62 |
Structure conservation index | 0.91 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975322 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11894710 110 + 20766785 GAUGAAGCUGCUCCUGCUUUUGCUUUCCCAUCGCUGCUGGCUGUUUCCGCAGCAGGAGUGGCGCAAAAAUAUCAGGCACAACAACAUCGCCUCGG------AUGGCAGCAACAACU ((((..((..(((((((....)).........(((((.((......))))))))))))..))((...........)).......))))(((....------..))).......... ( -36.30) >DroSec_CAF1 35218 110 + 1 GAUGAAGCUGCUCCUGCUUUUGCUUUCCCAUCGCCGCUGGCUGUUUCCGCAGCAGGAGUGGCGCAAAAAUAUCAGGCACAACAACAUCGCCUCGG------AUGGCAGCAACAACU ..((..(((((.((((.((((((.........((((((.(((((....)))))...))))))))))))....))))........((((......)------))))))))..))... ( -35.80) >DroSim_CAF1 35559 110 + 1 GAUGAAGCUGCUCCUGCUUUUGCUUUCCCAUCGCCGCUGGCUGUUUCCGCAGCAGGAGUGGCGCAAAAAUAUCAGGCACAACAACAUCGCCUCGG------AUGGCAGCAACAACU ..((..(((((.((((.((((((.........((((((.(((((....)))))...))))))))))))....))))........((((......)------))))))))..))... ( -35.80) >DroEre_CAF1 37139 110 + 1 GAUGAAGCCGCUCCUGCUUUUGCUUUCCUAUCGCCGCUGGCUGUUUCCGCAGCAAGAGUGGCGCAAAAAUAUCAAGCACAACAACAUCGCUUUGG------AUAGCAGCAACAACU ..((..((.((....))...((((.(((...(((((((.(((((....)))))...)))))))..........((((...........)))).))------).))))))..))... ( -31.30) >DroYak_CAF1 35725 116 + 1 GAUGAAGCUGCUCCUGCUUUUGCUUUCCUAUCGCCGCUGGCUGUUUCCGCAGCAAGAGUGGCGCAAAAAUAUCAAGCUCAACAACAUCGCUUCGGCUUCAAAUAGCAGCAACAACU ..((..((((((...((((............(((((((.(((((....)))))...)))))))..........))))...........((....)).......))))))..))... ( -34.55) >consensus GAUGAAGCUGCUCCUGCUUUUGCUUUCCCAUCGCCGCUGGCUGUUUCCGCAGCAGGAGUGGCGCAAAAAUAUCAGGCACAACAACAUCGCCUCGG______AUGGCAGCAACAACU ..((..((((((...((....))....((..(((((((.(((((....)))))...)))))))..........((((...........)))).))........))))))..))... (-31.50 = -30.58 + -0.92)
Location | 11,894,710 – 11,894,820 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 93.77 |
Mean single sequence MFE | -40.48 |
Consensus MFE | -38.80 |
Energy contribution | -37.96 |
Covariance contribution | -0.84 |
Combinations/Pair | 1.12 |
Mean z-score | -1.92 |
Structure conservation index | 0.96 |
SVM decision value | 3.27 |
SVM RNA-class probability | 0.998897 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11894710 110 - 20766785 AGUUGUUGCUGCCAU------CCGAGGCGAUGUUGUUGUGCCUGAUAUUUUUGCGCCACUCCUGCUGCGGAAACAGCCAGCAGCGAUGGGAAAGCAAAAGCAGGAGCAGCUUCAUC ..........(((..------....)))((((..(((((.((((....((((((.((..((((((((((....).).)))))).))..))...)))))).)))).)))))..)))) ( -42.00) >DroSec_CAF1 35218 110 - 1 AGUUGUUGCUGCCAU------CCGAGGCGAUGUUGUUGUGCCUGAUAUUUUUGCGCCACUCCUGCUGCGGAAACAGCCAGCGGCGAUGGGAAAGCAAAAGCAGGAGCAGCUUCAUC ..........(((..------....)))((((..(((((.((((....((((((.((..((((((((((....).).)))))).))..))...)))))).)))).)))))..)))) ( -41.30) >DroSim_CAF1 35559 110 - 1 AGUUGUUGCUGCCAU------CCGAGGCGAUGUUGUUGUGCCUGAUAUUUUUGCGCCACUCCUGCUGCGGAAACAGCCAGCGGCGAUGGGAAAGCAAAAGCAGGAGCAGCUUCAUC ..........(((..------....)))((((..(((((.((((....((((((.((..((((((((((....).).)))))).))..))...)))))).)))).)))))..)))) ( -41.30) >DroEre_CAF1 37139 110 - 1 AGUUGUUGCUGCUAU------CCAAAGCGAUGUUGUUGUGCUUGAUAUUUUUGCGCCACUCUUGCUGCGGAAACAGCCAGCGGCGAUAGGAAAGCAAAAGCAGGAGCGGCUUCAUC (((((((.(((((((------(....(((((...)))))....)))).((((((....((.(((((((((......)).))))))).))....)))))))))).)))))))..... ( -37.90) >DroYak_CAF1 35725 116 - 1 AGUUGUUGCUGCUAUUUGAAGCCGAAGCGAUGUUGUUGAGCUUGAUAUUUUUGCGCCACUCUUGCUGCGGAAACAGCCAGCGGCGAUAGGAAAGCAAAAGCAGGAGCAGCUUCAUC (((((((.(((((...(.((((...((((....))))..)))).)....(((((....((.(((((((((......)).))))))).))....)))))))))).)))))))..... ( -39.90) >consensus AGUUGUUGCUGCCAU______CCGAGGCGAUGUUGUUGUGCCUGAUAUUUUUGCGCCACUCCUGCUGCGGAAACAGCCAGCGGCGAUGGGAAAGCAAAAGCAGGAGCAGCUUCAUC (((((((.((((............(((((.........))))).....((((((.((..((((((((((....).).)))))).))..))...)))))))))).)))))))..... (-38.80 = -37.96 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:57 2006