Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,892,676 – 11,892,796 |
Length | 120 |
Max. P | 0.862676 |
Location | 11,892,676 – 11,892,796 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.99 |
Mean single sequence MFE | -29.19 |
Consensus MFE | -26.48 |
Energy contribution | -26.73 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.71 |
Structure conservation index | 0.91 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862676 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11892676 120 + 20766785 AUAAAAUUUAAAUCAUGUAUAUACGCAUACAAUAAUGGCAUUGCCUUUUGCACAUUAGGGGUGACACUUGAACCCCAAGUGGCCAUCUUAAUCUGACUCCAGGUUAGUUCCAUCGUUGGG ...............(((((......)))))...(((((.(..(((((........)))))..)((((((.....))))))))))).((((((((....))))))))..(((....))). ( -30.40) >DroSec_CAF1 33207 120 + 1 AUAAAAUUUAAAUCAUGUAUAUACACAUAUAAUAAUGGCAUUGCCUUUUGCACAUUAGGGGUGACACUUGAACCCCAAGUGGCCAUCUUAAUCUGACUCCAGGUUAGUUCCAUCUUUGGG ..............((((......))))......(((((.(..(((((........)))))..)((((((.....))))))))))).((((((((....))))))))..(((....))). ( -29.00) >DroEre_CAF1 35118 107 + 1 AUACAAUUUGAAUCAUGC------------CAUAAUGGCUUUGCCU-AUGCACAUUAGGGGUGACACUUGAACCCCAAGUGGCCAUCUUAAUCUGAUUCCAGGUUAGUUCCAUCGUUGGG ....(((((((((((...------------....(((((..(((..-..)))((((.(((((.........))))).))))))))).......))))).))))))....(((....))). ( -28.44) >DroYak_CAF1 33660 107 + 1 AUGAAAUUUGAAUCAUGU------------AAUAAUGGCUUUCCCU-UUGCACAUUAGGGGUGACACUUGAACCCCAAGUGGCCAUCUUAAUCUGGUUCCAGGUUAGUUCCAUCCUUGGG ((((........))))..------------....(((((...((((-(........)))))...((((((.....))))))))))).((((((((....))))))))..(((....))). ( -28.90) >consensus AUAAAAUUUAAAUCAUGU____________AAUAAUGGCAUUGCCU_UUGCACAUUAGGGGUGACACUUGAACCCCAAGUGGCCAUCUUAAUCUGACUCCAGGUUAGUUCCAUCGUUGGG ..................................(((((..(((.....)))((((.(((((.........))))).))))))))).((((((((....))))))))..(((....))). (-26.48 = -26.73 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:53 2006