Locus 3571

Sequence ID	2R_DroMel_CAF1
Location	11,892,323 – 11,892,435
Length	112
Max. P	0.795298

overview

Window 9

Location	11,892,323 – 11,892,435
Length	112
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	87.26
Mean single sequence MFE	-24.90
Consensus MFE	-17.45
Energy contribution	-17.70
Covariance contribution	0.25
Combinations/Pair	1.06
Mean z-score	-2.09
Structure conservation index	0.70
SVM decision value	0.60
SVM RNA-class probability	0.795298
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11892323 112 - 20766785
AAAGUGGCAGGAAAAUUGCACAGAAAAGUUGGAGAAAUCCAACACCUGGACACCCUU--UUUAGUCCUUUUUUUUACGCCGCCGACAAACCCACGACCCCCAUCAUCAUCUUCC
...(((((..(((((............((((((....))))))....((((......--....))))...)))))..)))))................................ ( -24.40)
>DroSec_CAF1 32819 112 - 1
AAAAUGGCAGGAAAAUCGCACGGAAAAGUUGGAGAAAUCCAACACCUGGACACCCUUUUUUUAGUCCUUUU--UUCCCCCGCCGACAAACCCACGACCCCCAUCAUCAUCUUCA
....((((.((..........((((((((((((....))))))....((((............))))..))--)))))).)))).............................. ( -25.20)
>DroEre_CAF1 34733 105 - 1
AAAGGGGCAGGAAAAUUGCACGGAAAAGUUGGGGAAAUCCAACACCUGGACACCCUU--UUCAGUCCUUUU--UUUC--CCCCGACAACCCCAGGACCCCCAUCAUCC---UCA
...(((((((.....))))..((((((((((((....))))))....((((......--....))))...)--))))--)))).........((((.........)))---).. ( -26.70)
>DroYak_CAF1 33266 105 - 1
AAAGUGGCAGGAAAAUUGCACGGAAAAGUUGGGGAAAUCCAACACCUGGACACCCUU--UUCAGUCCUUUU--UUCC--CCCCGAAAACCCCAGAACCCCCGUCAUCA---UCA
...(((((((.....))))((((.....((((((.............((((......--....))))..((--(((.--....))))))))))).....)))))))..---... ( -23.30)
>consensus
AAAGUGGCAGGAAAAUUGCACGGAAAAGUUGGAGAAAUCCAACACCUGGACACCCUU__UUCAGUCCUUUU__UUCC__CCCCGACAAACCCACGACCCCCAUCAUCA___UCA
......((((.....)))).(((....((((((....))))))....((((............))))..............))).............................. (-17.45 = -17.70 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:52 2006