Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,334,714 – 2,334,818 |
Length | 104 |
Max. P | 0.822576 |
Location | 2,334,714 – 2,334,818 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 95.51 |
Mean single sequence MFE | -27.77 |
Consensus MFE | -26.15 |
Energy contribution | -26.90 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 0.94 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.822576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2334714 104 + 20766785 UAUUUGUGCGAACAAUGAUGGUCGCAAUUCGAUUAUUCAACCAGUUGCACGGCUUCAGCUCGAAUUAAUCUCUAACCCGGACAUCCUUGGGUUCGUGAUUAAAU .....((((((....(((((((((.....)))))).))).....))))))(((....)))....((((((.(.(((((((......))))))).).)))))).. ( -27.90) >DroSec_CAF1 107166 104 + 1 UAUUUGUGCGAACAAUGAUGGUCGCAAUUCGAUUAUUCCACCAGUUGCACGGCUUCAGCUCGAAUUAAUCUCCAACCCGGACAUCCUUGGGUUCGUGAUUAAAU .....((((((.....((((((((.....)))))))).......))))))(((....)))....((((((.(.(((((((......))))))).).)))))).. ( -27.70) >DroEre_CAF1 98881 103 + 1 UG-UUGUGCGCACAAUGAUGGUCGCAAUUCGAUUAUUCCACCAGUUGCACGGCUUCAGCUCGAAUUAAUCUCUAACCCGGACAUCCUUGGGUCCGUGAUUAAAU .(-(((((((.((...((((((((.....))))))))......))))))))))...........((((((.(..((((((......))))))..).)))))).. ( -26.50) >DroYak_CAF1 95449 104 + 1 UAUUUGUGCGAACAAUGAUGGUCGCAAUUCGAUUAUUCCACCAGUUGCACGGCUUCAGCUAAAAUUAAUCUCUAACCCGGGCAUCCUUGGGUCCGUGAUUAAAU .....((((((.....((((((((.....)))))))).......))))))(((....)))....((((((.(..(((((((....)))))))..).)))))).. ( -29.00) >consensus UAUUUGUGCGAACAAUGAUGGUCGCAAUUCGAUUAUUCCACCAGUUGCACGGCUUCAGCUCGAAUUAAUCUCUAACCCGGACAUCCUUGGGUCCGUGAUUAAAU .....((((((.....((((((((.....)))))))).......))))))(((....)))....((((((.(.(((((((......))))))).).)))))).. (-26.15 = -26.90 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:18 2006