Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,890,387 – 11,890,503 |
Length | 116 |
Max. P | 0.506190 |
Location | 11,890,387 – 11,890,503 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.02 |
Mean single sequence MFE | -27.94 |
Consensus MFE | -23.35 |
Energy contribution | -22.97 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.06 |
Mean z-score | -1.65 |
Structure conservation index | 0.84 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506190 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11890387 116 - 20766785 ----UUCCGCAAUCCUGACCAAUUCGUUUGGCUUUAUUUAAGUUGCAAUUUGCCAACAACUGAUAGGUAGCCAACCGCCAGUUGGCCAAGCUCCGACAUCUUGACUUUCAUUAAGAUUCU ----.....................(((((((............((.....))...((((((...(((.....)))..)))))))))))))...((.(((((((......))))))))). ( -26.20) >DroPse_CAF1 28622 120 - 1 CCCCUCCAGCAAGUCUUACCAAUUCGGUUGGCUUUAUUUAAGUUACAAUUUGCCAACAACUGAUAGGUAGCCAACCGCCAGUUGGCCAAGCACUGACGUCUUGACUUUCAUUAAGAUUCU ........(..((((((.(((((((((((((((.......((((.............)))).......)))))))))..))))))..))).)))..)(((((((......)))))))... ( -29.16) >DroSec_CAF1 30888 116 - 1 ----UUCCGCAAUCCUGACCAAUUCGGUUGGCUUUAUUUAAGUUGCAAUUUGCCAACAACUGAUAGGUAGCCAACCGCCAGUUGGCCAAGCUCCGACAUCUUGACUUUCAUUAAGAUUCU ----...........((.(((((((((((((((.......(((((...........))))).......)))))))))..)))))).))......((.(((((((......))))))))). ( -30.64) >DroEre_CAF1 32821 116 - 1 ----UUCCGCAAUCCUGACCAAUUCGUUUGGCUUUAUUUAAGUUGCAAUUUGCCAACAACUGAUAGGUAGCCGACCGCCAGUUGGCCAAGCUCCGACGUCUUGACUUUCAUUAAGAUUCU ----.....................(((((((............((.....))...((((((...(((.....)))..)))))))))))))...((.(((((((......))))))))). ( -26.30) >DroYak_CAF1 31326 116 - 1 ----UUCCGCAAUCCUGACCAAUUCGUUUGGCUUUAUUUAAGUUGCAAUUUGCCAACAACUGAUAGGUAGCCAACCGCCAGUUGGCCAAGCUCCGACAUCUUGACUUUCAUUAAGAUUCU ----.....................(((((((............((.....))...((((((...(((.....)))..)))))))))))))...((.(((((((......))))))))). ( -26.20) >DroPer_CAF1 29987 120 - 1 CCCCUCUAGCAAGUCUUACCAAUUCGGUUGGCUUUAUUUAAGUUACAAUUUGCCAACAACUGAUAGGUAGCCAACCGCCAGUUGGCCAAGCACUGACGUCUUGACUUUCAUUAAGAUUCU ........(..((((((.(((((((((((((((.......((((.............)))).......)))))))))..))))))..))).)))..)(((((((......)))))))... ( -29.16) >consensus ____UUCCGCAAUCCUGACCAAUUCGGUUGGCUUUAUUUAAGUUGCAAUUUGCCAACAACUGAUAGGUAGCCAACCGCCAGUUGGCCAAGCUCCGACAUCUUGACUUUCAUUAAGAUUCU ........((.......(((.(((.(.(((((...(((........)))..)))))...).))).))).((((((.....))))))...))...((.(((((((......))))))))). (-23.35 = -22.97 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:47 2006