Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,882,998 – 11,883,101 |
Length | 103 |
Max. P | 0.991102 |
Location | 11,882,998 – 11,883,101 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 97.77 |
Mean single sequence MFE | -35.80 |
Consensus MFE | -32.32 |
Energy contribution | -33.12 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.06 |
Structure conservation index | 0.90 |
SVM decision value | 2.25 |
SVM RNA-class probability | 0.991102 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11882998 103 + 20766785 UGGCAAGGAUCGCUGGCUGUCAUGGGUAAUGAAUGCGCUGGCAAACAAUUAUUUUUAUAUGACUGCUGGCUGCGACAGCCGCCUGUCUCUUUGCCGCUCUUCU .((((((((..((..((.((((((((((((...(((....)))....))))))....)))))).))..))...(((((....)))))))))))))........ ( -37.50) >DroSec_CAF1 23427 103 + 1 UGGCAAGGAUCGCUGACUGUCAUGGGUAAUGAAUGCGCUGGCAAACAAUUAUUUUUAUAUGACUGCUGACUGCGACAGGCGGCUGUCUCUUUGCCGCUCUUCU .((((((((..((((.(((((..(((((((...(((....)))....)))))))..........((.....))))))).))))....))))))))........ ( -31.00) >DroSim_CAF1 23610 103 + 1 UGGCAAGGAUCGCUGGCUGUCAUGGGUAAUGAAUGCGCUGGCAAACAAUUAUUUUUAUAUGACUGCUGGCUGCGACAGGCGGCUGUCUCUUUGCCGCUCUUCU .((((((((..((..((.((((((((((((...(((....)))....))))))....)))))).))..))...(((((....)))))))))))))........ ( -38.20) >DroEre_CAF1 25538 103 + 1 UGGCAAGGAUCGCUGGCUGUCAUGGGUAAUGAAUGCGCUGGCAAACAAUUAUUUUUAUAUGACUGCUGUCUGCGACAGGCGGCUGUCUCUUUGGCGCUCUUCU .(.((((((..((..((..((((.....))))....))..))..................(((.((((((((...)))))))).))))))))).)........ ( -34.10) >DroYak_CAF1 23624 103 + 1 UGGCAAGGAUCGCUGGCUGUCAUGGGUAAUGAAUGCGCUGGCAAACAAUUAUUUUUAUAUGACUGCUGGCUGCGACAGGCGGCUGUCUCUUUGCCGCUCUUCU .((((((((..((..((.((((((((((((...(((....)))....))))))....)))))).))..))...(((((....)))))))))))))........ ( -38.20) >consensus UGGCAAGGAUCGCUGGCUGUCAUGGGUAAUGAAUGCGCUGGCAAACAAUUAUUUUUAUAUGACUGCUGGCUGCGACAGGCGGCUGUCUCUUUGCCGCUCUUCU .((((((((..((((((.((((((((((((...(((....)))....))))))....)))))).))))))...(((((....)))))))))))))........ (-32.32 = -33.12 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:39 2006