Locus 3563

Sequence ID 2R_DroMel_CAF1
Location 11,882,279 – 11,882,373
Length 94
Max. P 0.993532
window5803

overview

Window 3

Location 11,882,279 – 11,882,373
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 97.23
Mean single sequence MFE -26.07
Consensus MFE -23.15
Energy contribution -23.55
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.17
Structure conservation index 0.89
SVM decision value 2.41
SVM RNA-class probability 0.993532
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11882279 94 + 20766785
UCGGGAUGUCUGGAUGUUUGGGCUUACUUAUGUAUUUCACUCUUUAUGAUUUAUUUCGAAAUACUCUGGCCACAUUCAGACACCAGCGGCAGAA
...((.(((((((((((...((((.......(((((((...................)))))))...))))))))))))))))).......... ( -26.91)
>DroSec_CAF1 22711 94 + 1
UCGGGAUGUCUGGAUGUUUGGUCUUACUUAUGUAUUUCACUCUUUAUGAUUUAUUUCGAAAUACUCUGGCCACAUUCAGACACCAGCGGCAGAA
...((.(((((((((((..((((........(((((((...................)))))))...))))))))))))))))).......... ( -25.91)
>DroSim_CAF1 22891 94 + 1
UCGGGAUGUCUGGAUGUUUGGGCUUACUUAUGUAUUUCACUCUUUAUGAUUUAUUUCGAAAUACUCUGGCCACAUUCAGACACCAGCGGCAGAA
...((.(((((((((((...((((.......(((((((...................)))))))...))))))))))))))))).......... ( -26.91)
>DroEre_CAF1 24827 94 + 1
UUGGCACGUCUGGAUGUUUGGGCUUACUUAUGUAUUUCACUCUUUAUGAUUUAUUUCGAAAUACGCUGGCCACAUUCAGACACCAGCGGCAGAA
...((.((.((((.((((((((((......((((((((...................))))))))..)))).....)))))))))))))).... ( -25.11)
>DroYak_CAF1 22885 94 + 1
UCGGCAUGUCUGGAUGUUUGGGCUUACUUAUGUAUUUCACUCGUUAUGAUUUAUUUCGAAAUACUCUGGCCACAUUCAGACACCAGCGGCAGAA
..((..(((((((((((...((((.......(((((((...................)))))))...))))))))))))))))).......... ( -25.51)
>consensus
UCGGGAUGUCUGGAUGUUUGGGCUUACUUAUGUAUUUCACUCUUUAUGAUUUAUUUCGAAAUACUCUGGCCACAUUCAGACACCAGCGGCAGAA
..((..(((((((((((...((((.......(((((((...................)))))))...))))))))))))))))).......... (-23.15 = -23.55 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:37 2006