Locus 356

Sequence ID 2R_DroMel_CAF1
Location 2,332,565 – 2,332,669
Length 104
Max. P 0.593597
window705

overview

Window 5

Location 2,332,565 – 2,332,669
Length 104
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 81.59
Mean single sequence MFE -40.70
Consensus MFE -23.14
Energy contribution -23.99
Covariance contribution 0.85
Combinations/Pair 1.19
Mean z-score -2.12
Structure conservation index 0.57
SVM decision value 0.12
SVM RNA-class probability 0.593597
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2332565 104 - 20766785
GGAUCACGAAAGUGGCUUGCGGUUUUCGGGGUU-----------UCUGU-GGCA-CCGUGGCCGCAAAAGGACUUUAAGGCCAAACACUGGGCCGCCAAAAGGACACGAAUCCCGAG
((.((((....))))))........((((((((-----------(.(((-(((.-.....))))))...(..((((..((((........))))....))))..)..))))))))). ( -38.80)
>DroSec_CAF1 104979 104 - 1
GGAUCACGAAAGUGGCUUGCGGCUUUCGGGGUU-----------UCUGU-GGCC-CGUUGGCCGUAAAAGGACUUUAAGGCCAAACACUGGGCCGCCAAAAGGACACGAAUCCCGAG
....(((....)))((.....))..((((((((-----------(.(((-((((-((((((((.((((.....)))).))))))....)))))).((....))))).))))))))). ( -43.90)
>DroSim_CAF1 100047 104 - 1
GGAUCACGAAAGUGGCUUGCGGCUUUCGGGGUU-----------UCUGU-GGCC-CGUUGGCCGCAAAAGGACUUUAAGGCCAAACACUGGGCCGCCAAAAGGACACGAAUCCCGAG
....(((....)))((.....))..((((((((-----------(.(((-((((-((((((((..(((.....)))..))))))....)))))).((....))))).))))))))). ( -42.70)
>DroEre_CAF1 96840 102 - 1
GGAUCACGAAAGUGGCUUGCGGCUUUCGG-GUU-----------CCUGU-GGCC--CGUGGCCGCAAAAGGACUUUAAGGCCAAACACUGGGCCGCCGAAAGGACAAAAAUCCCGAG
...((((....)))).((((((((..(((-(((-----------.....-))))--)).))))))))..(((.(((..((((........))))(((....)).).))).))).... ( -43.00)
>DroYak_CAF1 93301 103 - 1
GGAUCACGAAAGUGGCUUGCGGCUUUCGGGGUU-----------UCUGU-GGCC--GGUGGCCGCAAAAGGACUUUAGGGCAAAACACUGGGCCGCCGAGAGGACAAAAAUCCCAAG
.......((((((.(....).))))))((((((-----------(.(((-((((--(((((((.(.(((....))).))))....)))).)))).((....))))).)))))))... ( -38.30)
>DroPer_CAF1 107387 109 - 1
GGAUCGCAAAAGUGGCUUGCGGCUUUCCGAGGUCGGCCCAGGAGGCUGGGGGCCCCAGAAGCCGCA-AAGGACUUUAAGCCGAAAUGC---GC----AAACAAACGAAAAUGCCUUG
....((((....((((((((((((((..(.((((..(((((....))))))))))..))))))))(-((....)))))))))...)))---).----.................... ( -37.50)
>consensus
GGAUCACGAAAGUGGCUUGCGGCUUUCGGGGUU___________UCUGU_GGCC_CGGUGGCCGCAAAAGGACUUUAAGGCCAAACACUGGGCCGCCAAAAGGACAAAAAUCCCGAG
((.((((....)))).((((((((......((((...............))))......))))))))..(..((((..((((........))))....))))..).......))... (-23.14 = -23.99 +   0.85)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:17 2006