Locus 3559

Sequence ID 2R_DroMel_CAF1
Location 11,874,476 – 11,874,568
Length 92
Max. P 0.940578
window5796

overview

Window 6

Location 11,874,476 – 11,874,568
Length 92
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 90.13
Mean single sequence MFE -24.07
Consensus MFE -21.32
Energy contribution -21.48
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.97
Structure conservation index 0.89
SVM decision value 1.31
SVM RNA-class probability 0.940578
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11874476 92 + 20766785
----------------------------CGCUUCCUGUCUAUUUACGCUGAUUUAUGGCCGAGCAUUGUUGACUCUUAAUGGCAAAUGUCGACAAAUUUGCUUUAAUGGUCAAUAUAACA
----------------------------.((((((.(((..........)))....))..))))..((((((((.((((.(((((((........))))))))))).))))))))..... ( -22.40)
>DroPse_CAF1 12982 120 + 1
GGUUUUCAGGAAGAUCCUAAGGAGAAGGCGCUUCCUGUCUAUUUACGCUGAUUUAUGGCCGAACAUUGUUGACUCUUAAUGGCAAAUGUCGACAAAUUUGCUUUAAUGGUCAAUAUAAUA
.((((.(((((((..(((.......)))..))))))).........(((.......))).))))..((((((((.((((.(((((((........))))))))))).))))))))..... ( -32.40)
>DroSim_CAF1 14512 92 + 1
----------------------------CGCUUCCUGUCUAUUUACGCUGAUUUAUGGCCGAGCAUUGUUGACUCUUAAUGGCAAAUGUCGACAAAUUUGCUUUAAUGGUCAAUAUAACA
----------------------------.((((((.(((..........)))....))..))))..((((((((.((((.(((((((........))))))))))).))))))))..... ( -22.40)
>DroEre_CAF1 16999 92 + 1
----------------------------CGCUUCCUGUCUAUUUACGCUGAUUUAUGGCCGAGCAUUGUUGACUCUUAAUGGCAAAUGUCGACAAAUUUGCUUUAAUGGUCAAUAUAACA
----------------------------.((((((.(((..........)))....))..))))..((((((((.((((.(((((((........))))))))))).))))))))..... ( -22.40)
>DroYak_CAF1 15039 92 + 1
----------------------------CGCUUCCUGUCUAUUUACGCUGAUUUAUGGCCGAGCAUUGUUGACUCUUAAUGGCAAAUGUCGACAAAUUUGCUUUAAUGGUCAAUAUAACA
----------------------------.((((((.(((..........)))....))..))))..((((((((.((((.(((((((........))))))))))).))))))))..... ( -22.40)
>DroAna_CAF1 13528 92 + 1
----------------------------CGCUUCCUGUCUAUUUACGCUGAUUUAUGGCCGAGCAUUGUUGACUCUUAAUGGCAAAUGUCGACAAAUUUGCUUUAAUGGUCAAUAUAACA
----------------------------.((((((.(((..........)))....))..))))..((((((((.((((.(((((((........))))))))))).))))))))..... ( -22.40)
>consensus
____________________________CGCUUCCUGUCUAUUUACGCUGAUUUAUGGCCGAGCAUUGUUGACUCUUAAUGGCAAAUGUCGACAAAUUUGCUUUAAUGGUCAAUAUAACA
.............................((((((.(((..........)))....))..))))..((((((((.((((.(((((((........))))))))))).))))))))..... (-21.32 = -21.48 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:29 2006