Locus 3555

Sequence ID 2R_DroMel_CAF1
Location 11,870,994 – 11,871,086
Length 92
Max. P 0.570044
window5788

overview

Window 8

Location 11,870,994 – 11,871,086
Length 92
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 88.03
Mean single sequence MFE -34.03
Consensus MFE -25.46
Energy contribution -26.43
Covariance contribution 0.98
Combinations/Pair 1.19
Mean z-score -2.82
Structure conservation index 0.75
SVM decision value 0.07
SVM RNA-class probability 0.570044
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11870994 92 - 20766785
UGUUGCAGUUGCCACUCUGUAGCAGCAACAUGUUGCAGAUGGCGAUAGGGGC--UG-CGUUGACUAGUUGACUAUGCUGCCAUUCUGGAAAUGGC
.(((.(.(((((((.(((((((((......)))))))))))))))).).)))--..-.((..(....)..))......((((((.....)))))) ( -33.20)
>DroSec_CAF1 11607 92 - 1
UGUUGCAGUUGCCACUCUGUAGCAGCAACAUGUUGCAGAUGGCGAUAGGGGC--UG-CGUUGACUAGUUGACUAUGUUGCCAUUCUGGAAAUGGC
.(((.(.(((((((.(((((((((......)))))))))))))))).).)))--..-.((..(....)..))......((((((.....)))))) ( -33.20)
>DroSim_CAF1 11061 92 - 1
UGUUGCAGUUGCCACUCUGUAGCAGCAACAUGUUGCAGAUGGCGAUAGGGGC--UG-CGUUGACUAGUUGACUAUGUUGCCAUUCUGGAAAUGGC
.(((.(.(((((((.(((((((((......)))))))))))))))).).)))--..-.((..(....)..))......((((((.....)))))) ( -33.20)
>DroEre_CAF1 13559 92 - 1
AGUUGCAGUUGCCACUCUGUAGCAGCAACAUGUUGCAGAUGGCGAUAGGAGC--UG-CGUUGACUAGUUGACUAUGUUGCCAUUCUGGAAAUGGC
((((.(.(((((((.(((((((((......)))))))))))))))).).)))--).-.((..(....)..))......((((((.....)))))) ( -34.40)
>DroYak_CAF1 11413 92 - 1
UGCUCCAGUUGCCACUCUGUAGCAGCAACAUGUUGCAGAUGGCGAUAGGAGC--UG-CGUUGACUAGUUGACUAUGUUGCCAUUCUGGAAAUGGC
.(((((.(((((((.(((((((((......)))))))))))))))).)))))--..-.((..(....)..))......((((((.....)))))) ( -40.40)
>DroAna_CAF1 9583 89 - 1
UGUUACAG------AGUGGCAGAAGCAACAUGUUGCUGAUGCUGAUAAUGCCGUUGUCGUUGACUAGUCGACUAUGUUGCCAUUCCAGUAACGGG
.(((((.(------((((((((.(((((....)))))......((((((...))))))(((((....)))))....)))))))))..)))))... ( -29.80)
>consensus
UGUUGCAGUUGCCACUCUGUAGCAGCAACAUGUUGCAGAUGGCGAUAGGGGC__UG_CGUUGACUAGUUGACUAUGUUGCCAUUCUGGAAAUGGC
.(((.(.(((((((.(((((((((......)))))))))))))))).).)))......(((((....)))))......((((((.....)))))) (-25.46 = -26.43 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:22 2006