| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,866,054 – 11,866,148 |
| Length | 94 |
| Max. P | 0.535395 |
| Location | 11,866,054 – 11,866,148 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 74.26 |
| Mean single sequence MFE | -22.50 |
| Consensus MFE | -11.86 |
| Energy contribution | -12.00 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.535395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11866054 94 + 20766785 AAACUC-----------------GCGUCUGGUUGAAAUGGAAAUUUCGGUGAAAAACUAUUGAAAGCUAGCCGAAAAUGGUCAGGAAAAUAAAAGGCUUGUGGC-CAACGCU ......-----------------(((((((((((((((....)))))(((.....)))......)))))).......((((((.((...........)).))))-)))))). ( -22.10) >DroSec_CAF1 6616 94 + 1 AAACUC-----------------GUGUCUGGUUGAAAUGGAAAUUUCGGUGAAAAACUAUUGAAAGCUAGACGAAAAUGGCCAGGAAAAUAAAAGGCUUGCGGC-CAACGCU .....(-----------------(((((((((((((((....)))))(((.....)))......)))))))).....(((((.(.((..........)).))))-))))).. ( -23.60) >DroSim_CAF1 6034 94 + 1 AAACUC-----------------GUGUCUGGUUGAAAUGGAAAUUUCGGUGAAAAACUAUUGAAAGCUAGACGAAAAUGGCCAGGAAAAUAAAAGGCUUGCGGC-CAACGCU .....(-----------------(((((((((((((((....)))))(((.....)))......)))))))).....(((((.(.((..........)).))))-))))).. ( -23.60) >DroEre_CAF1 9342 77 + 1 -------------------AA--GUGUCUGGAUGAAAUGGAAAUUUCGGGGAAAAACUAUCGAAAGCUAGACGAAA--------------AAAACGCUGGCGGCUUAACGCU -------------------..--.(((((((.((((((....))))))............(....))))))))...--------------........((((......)))) ( -17.70) >DroYak_CAF1 6430 108 + 1 AAACUUGU-AUUAACACGAGA--GUGUCUGGAUGAAAUGGUAAUUUCGGUGAAAAACUAUCGAAAGCUAGCCGAAAAUGGCCGGGAAUAUAAAACGCUUGCGGC-AAACGCU ....((((-(((.((((....--))))((((......((((..((((((((......))))))))....)))).......)))).))))))).......(((..-...))). ( -26.62) >DroAna_CAF1 6131 111 + 1 UCAAUUGUCCUUAACAGGAGUGUGUGUCUAAAGCAAAUGAAAAUGUCCGUGAAUAACUAUUGAAAGCUGGACAAAAACGUUGAGGAAAAUAAAACGCUUGCGGC-CAACGCU ...(((.((((((((....((...(((((..(((..((....))....((.....))........))))))))...)))))))))).))).........(((..-...))). ( -21.40) >consensus AAACUC_________________GUGUCUGGAUGAAAUGGAAAUUUCGGUGAAAAACUAUUGAAAGCUAGACGAAAAUGGCCAGGAAAAUAAAACGCUUGCGGC_CAACGCU ........................(((((((............((((((((......)))))))).)))))))..........................(((......))). (-11.86 = -12.00 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:15 2006