Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,864,307 – 11,864,414 |
Length | 107 |
Max. P | 0.754562 |
Location | 11,864,307 – 11,864,414 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.05 |
Mean single sequence MFE | -28.11 |
Consensus MFE | -19.52 |
Energy contribution | -19.36 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.85 |
Structure conservation index | 0.69 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.754562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11864307 107 - 20766785 UUCCAACCUGCCCCUGCCCCCUUUUGCUCCACGCAGUCAGCGUCUUUUGUUGCGCUUAAUGAAUUUUACGUAAAUUUUACGAGCGCUGAUUUCUGGCAG-CAGCAGCA .......((((..(((((......(((.....)))((((((((........))((((...((((((.....))))))...))))))))))....)))))-..)))).. ( -30.20) >DroSec_CAF1 4825 107 - 1 AUCCCACCUGCCCCUGCCCCCUUUUCGUCCUCGUAGCCAGCGUCUUUUGUUGCGCUUAAUGAAUUUUACGUAAAUUUUACGAGCGCUGAUUUCUGGCAG-CAGCAGCA .......((((..(((((......((((.(((((((((((((.....))))).)).....((((((.....)))))))))))).)).)).....)))))-..)))).. ( -30.30) >DroEre_CAF1 4910 98 - 1 GCCCAACCUGG-----U-CUGCUUUCCUCCUACCAGCCAGCGUCUUUUGUUGCGCUUAAUGAAUUUUACGUAAAUUUUACGAGCGCUGAUUUCUGGCAG-C---AGCA (((......))-----)-(((((............(((((.(((.......((((((...((((((.....))))))...)))))).)))..)))))))-)---)).. ( -23.40) >DroYak_CAF1 4962 97 - 1 GCCCAACCUG------C-CCGCUUUACUCCGCCCAGCCAGCGUCUUUUGUUGCGCUUAAUGAAUUUUACGUAAAUUUUACGAGCGCUGAUUUCUGGCAG-C---AGCA .......(((------(-..((........))...(((((.(((.......((((((...((((((.....))))))...)))))).)))..))))).)-)---)).. ( -24.90) >DroAna_CAF1 4857 98 - 1 GGCCAACCUGU-------U---UCCUCUCCUGGCAGCCAGCGUCUUUUGUUGCGCUUAAUGAAUUUUACGUAAAUUUUACGAGCGCUGAUUUCUGGCGCUGAGCAGUG .((((......-------.---........)))).(((((((((....(((((((((...((((((.....))))))...)))))).)))....))))))).)).... ( -31.76) >consensus GCCCAACCUGC_____C_CCCCUUUCCUCCUCGCAGCCAGCGUCUUUUGUUGCGCUUAAUGAAUUUUACGUAAAUUUUACGAGCGCUGAUUUCUGGCAG_CAGCAGCA ...................................(((((.(((.......((((((...((((((.....))))))...)))))).)))..)))))........... (-19.52 = -19.36 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:13 2006