Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,330,116 – 2,330,216 |
Length | 100 |
Max. P | 0.870177 |
Location | 2,330,116 – 2,330,216 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 73.83 |
Mean single sequence MFE | -23.74 |
Consensus MFE | -9.13 |
Energy contribution | -9.53 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.29 |
Mean z-score | -1.97 |
Structure conservation index | 0.38 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870177 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2330116 100 + 20766785 CGAAGGAUUGGGAAAAA-AGGAUGCU--CAG----UUCAAAAUC-AU--UUGCUUGUAUCCUUUGCUAUCUACAAUACAUUUAGAUAGUGUGUAGAAAAUGUCCAUUUAA ....((((..((...((-(((((((.--.((----(........-..--..))).))))))))).)).((((((.(((.........)))))))))....))))...... ( -22.70) >DroSec_CAF1 102510 96 + 1 CGAAGGAUUGGAAAAAAAGGGAUGCU--GAG----UUCAAAAUC-AU--UUGCUUGUAUCCUUUGCUAUCUA-----CAUUUAGAUAAUGUGUGGAAAAUGUCCAUUUGA (((((((((((.....(((((((((.--(((----(........-..--..))))))))))))).)))((((-----(((.........)))))))....)))).)))). ( -23.90) >DroSim_CAF1 97550 96 + 1 CGAAGGAUUGGAAAAAAAAGGAUGCU--GAG----UUCAAAAUC-AU--UUGCUUGUAUCCUUUGCUAUCUA-----CAUUUAGAUAGUGUGUGGAAAAUGUCCAUUUAA .....((.((((....(((((((((.--(((----(........-..--..)))))))))))))((((((((-----....))))))))............)))).)).. ( -24.50) >DroEre_CAF1 94462 100 + 1 UAAAGGAUUGAAAAGGA-GUGGUGCAAGGAC----UCUAAAAUCUACUGUCGCUUGUGUCCUUCGCUAUCUA-----CGCUUAGAUAGUGUGCGUGAAUUGGCCAUUUAA ....((.(..(...(((-(.((..(((((((----..((.....))..))).))))..))))))((((((((-----....)))))))).........)..)))...... ( -26.50) >DroYak_CAF1 90898 95 + 1 UGAAAAAUUGAAAGAAA-AUGGAGCAAGGAAAUGGUUUCAAAUAUACUGCCGCUUGUUUCCUUUGCUAUCUA-----CAUUUAGAUA---------AAUUGUCCAUUUAA ...............((-((((((((((((((((((............)))....)))))).))))((((((-----....))))))---------.....))))))).. ( -21.10) >consensus CGAAGGAUUGGAAAAAA_AGGAUGCU__GAG____UUCAAAAUC_AU__UUGCUUGUAUCCUUUGCUAUCUA_____CAUUUAGAUAGUGUGUGGAAAAUGUCCAUUUAA .....((.((((......(((((((..............................)))))))..((((((((.........))))))))............)))).)).. ( -9.13 = -9.53 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:16 2006