Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,861,686 – 11,861,790 |
Length | 104 |
Max. P | 0.603212 |
Location | 11,861,686 – 11,861,790 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 78.74 |
Mean single sequence MFE | -36.07 |
Consensus MFE | -19.57 |
Energy contribution | -19.55 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.33 |
Mean z-score | -1.82 |
Structure conservation index | 0.54 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603212 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11861686 104 + 20766785 UUCAGAGUCUUCUGGGGCAGAUCACUGUUCCGGGCUUUACGAUCGAUAAAGCCAACCGUCCGCAGCAGUUCUUCGUCGGAGGAUACGUCCUCGUCGUCCUCAUU ....(((...((((((((((....))))))))))....((((((((..(((..(((.((.....)).))))))..)))(((((....)))))))))).)))... ( -31.60) >DroPse_CAF1 2208 101 + 1 UUUAGUGUCUUCGGACGCAGCUCGCGUUUCUUGGCCUUGUGAUCGAUAAAGCCAACUGUUUUAAGAAGCUCUUCAUCCGAUGAGGAGCC---AGAGUCCUCGUU ....(((((....))))).((((.......(((((.((((.....)))).)))))............(((((((((...))))))))).---.))))....... ( -31.90) >DroSim_CAF1 1646 104 + 1 UUCAGAGUCUUCUGGGGCAGAUCACUGUUCCGGGCUUUGCGAUCGAUGAAGCCAACCGUCCGCAGCAGUUCCUCGUCGGAGGAUUCGUCCUCGUCGUCCUCGUU ....(((...((((((((((....))))))))))....(((((((((((.(..(((.((.....)).)))).))))))(((((....)))))))))).)))... ( -32.90) >DroEre_CAF1 2253 104 + 1 UUUAGAGUCUUCUGGGGCAGAUCACUGCUCCGGGCUUUGCGGUCGAUGAAGCCUACUGUCUGCAGCAGCUCUUCGUCGGAGGAUGCGUCCUCGUCGUCCUCGUU ..((((((((...(((((((....)))))))))))))))....((((((((.((.(((....))).))..))))))))(((((((((....)).)))))))... ( -44.20) >DroYak_CAF1 2264 104 + 1 UUUAGAGUCUUCUGGGGCAGACUACUGCUCCGGGCUUUGCGAUCGAUGAAGCCUACAGUCUUUAGUAGUUCUUCGUCGGAGGAUGCGUCCUCGUCGUCCUCGUU ..((((((((...(((((((....)))))))))))))))....((((((((.((((........))))..))))))))(((((((((....)).)))))))... ( -43.90) >DroPer_CAF1 2208 101 + 1 UUUAGUGUCUUCGGACGCAGCUCGCGUUUCUUGGCCUUGUGAUCGAUAAAGCCAACUGUUUUAAGAAGCUCUUCAUCCGAUGAGGAGCC---AGAGUCCUCGUU ....(((((....))))).((((.......(((((.((((.....)))).)))))............(((((((((...))))))))).---.))))....... ( -31.90) >consensus UUUAGAGUCUUCUGGGGCAGAUCACUGUUCCGGGCUUUGCGAUCGAUAAAGCCAACUGUCUGCAGCAGCUCUUCGUCGGAGGAUGCGUCCUCGUCGUCCUCGUU ......(((((((((.(.(((..((((((..((((((((.......)))))))).........))))))))).).))))))))).................... (-19.57 = -19.55 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:12 2006