Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,859,929 – 11,860,019 |
Length | 90 |
Max. P | 0.882883 |
Location | 11,859,929 – 11,860,019 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 69.14 |
Mean single sequence MFE | -32.63 |
Consensus MFE | -12.80 |
Energy contribution | -13.24 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.43 |
Mean z-score | -2.00 |
Structure conservation index | 0.39 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882883 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11859929 90 + 20766785 ACUCUGACUGCAGCUCCGUCGGCCAUAGCCUC---CACGCAGGGAGCUGCACCGGCCCCAACUUUAAGUACUGGUGGUGCUUUUGCCAAUCUC ........(((((((((...(((....)))..---(.....))))))))))..(((.........((((((.....))))))..)))...... ( -27.20) >DroSec_CAF1 484 90 + 1 ACUCUGACUGCAGCUCCGGCGGCCAUAGCGCC---GACGCAAGGAGCUGCACCGGCCCCAACUUUAAGUACUGGCGGUGCUUUUGCCAAUCUC ........(((((((((((((.......))))---).(....)))))))))..(((.........((((((.....))))))..)))...... ( -31.70) >DroEre_CAF1 475 90 + 1 ACUCUGACAGCAGCUCCGGCGGCCAUAGCUCC---CACCCUGGGAGCUGCACCUGCCCCAACCUUAAGUACUGGCGGUGCUUUUGCCAAUCUC ...(((....)))....(((((....((((((---(.....)))))))(((((.(((...((.....))...))))))))..)))))...... ( -32.20) >DroYak_CAF1 484 90 + 1 ACUCUGACAACAGCUCCGGCGGCCAUUGCUCC---CACCCUAGGAGCUGCACCUGCCGCAACCUUAAGUACUGGCGGGGCUUUUGCCAAUCUC ....((.(((.((((((((((((....(((((---.......))))).......)))))..((.........))))))))).))).))..... ( -32.00) >DroAna_CAF1 472 93 + 1 AGUUUGACGGCAGCUCCUACGGCUGUUGCUCCACAGACUGCGGCAGCCGCGGCAGUGCCCACUCUGAGCACUGGAGGUGCCUUUGCUAAUCUA (((..((.((((.((((..((((((((((..........))))))))))..)((((((.(.....).))))))))).)))))).)))...... ( -40.40) >DroPer_CAF1 456 73 + 1 --------AGCCGCUGUU------GUGGCUCCUCUCACUGGAGUGGU------GGCGCCUGCUGUAGGCACCGGCGGGGCAUUUGCCAAUUUA --------..(((((((.------.(.(((((.......))))).).------.))(((((...)))))...)))))(((....)))...... ( -32.30) >consensus ACUCUGACAGCAGCUCCGGCGGCCAUAGCUCC___CACCCAAGGAGCUGCACCGGCCCCAACUUUAAGUACUGGCGGUGCUUUUGCCAAUCUC .........((((((((.........................)))))))).....................((((((.....))))))..... (-12.80 = -13.24 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:10 2006