Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,848,499 – 11,848,597 |
Length | 98 |
Max. P | 0.958762 |
Location | 11,848,499 – 11,848,597 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.19 |
Mean single sequence MFE | -39.50 |
Consensus MFE | -17.70 |
Energy contribution | -17.07 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.24 |
Mean z-score | -2.70 |
Structure conservation index | 0.45 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11848499 98 - 20766785 UCGCAACAUAGACAAACUGG----CGCUGGACUGUCUGGCGCCAGAGUUUGG------G---GUUGUGAUG----GUUCCAUUCGGGGAAAUGGUUCCUUUGUCUG-----AGGAAAGUG (((((((.(((((...((((----(((..(.....)..))))))).))))).------.---)))))))..----.((((..(((((.(((.(....)))).))))-----))))).... ( -39.20) >DroPse_CAF1 12451 117 - 1 ---ACAGGUAGACAGGCUGGCAGCCGCUGGUCUGUCUGGCGCCUGCUUUGCGAAAUUCGCCUGUGGAGACGGGGAGUCUCCUCCGGAAGUGCCGUACACUUGUGUGGAUUCGGGAAAUUG ---((((((((((((((..((....))..))))))))..(((.......)))......))))))((((((.....))))))(((.(((...((((((....)))))).))).)))..... ( -51.70) >DroSec_CAF1 10533 98 - 1 UCGAAACAUAGACAAACUGG----CGCUGGACUGUCUGGCGCCAGAGUUUGG------G---GUUGUGAUG----GUUUCAUUCGGGGAAAUGGUUCCUUUGUCUG-----GGGAAAGUG ......(.((((((((((((----(((..(.....)..))))))).....((------.---.(..(....----.(..(....)..)..)..)..))))))))))-----.)....... ( -33.40) >DroSim_CAF1 11217 98 - 1 UCGAAACAUAGACAAACUGG----CGCUGGACUGUCUGGCGCCAGAGUUUGG------G---GUUGUGAUG----GUUCCAUUCGGGGAAAUGGUUCAUUUGUCUG-----GGGAAAGUG (((.(((.(((((...((((----(((..(.....)..))))))).))))).------.---))).)))..----.((((...((((.(((((...))))).))))-----.)))).... ( -34.10) >DroEre_CAF1 11179 92 - 1 UAGAAACAUAGACAAACUGG----CGCUGGACUGCCUGGCGCCAGAGUUUGG------G---GUUGUGAUG----GUUCCAUUCGGG------GCUCCUUUGUCUG-----CGGAGAGUG ......(.((((((((((((----(((..(.....)..))))))).....((------(---(((.(((((----....)).))).)------)))))))))))))-----.)....... ( -38.20) >DroYak_CAF1 12277 92 - 1 UCGAAACAUAGACAAACUGG----CGCUGGACUGUCUGGCGCCAGAGUUUGG------G---GUUGCGAUG----GUUCCAUUCGGG------GCUCCUUUGUCUG-----CGGAAAGUG ......(.((((((((((((----(((..(.....)..))))))).....((------(---(((.(((((----....)).))).)------)))))))))))))-----.)....... ( -40.40) >consensus UCGAAACAUAGACAAACUGG____CGCUGGACUGUCUGGCGCCAGAGUUUGG______G___GUUGUGAUG____GUUCCAUUCGGGGAAAUGGUUCCUUUGUCUG_____GGGAAAGUG ........((((((((((((....(((..(.....)..)))))))...................((.(((.....))).)).................)))))))).............. (-17.70 = -17.07 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:08 2006