Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,847,313 – 11,847,405 |
Length | 92 |
Max. P | 0.520984 |
Location | 11,847,313 – 11,847,405 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 80.84 |
Mean single sequence MFE | -13.04 |
Consensus MFE | -8.70 |
Energy contribution | -8.23 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.45 |
Mean z-score | -1.32 |
Structure conservation index | 0.67 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.520984 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11847313 92 - 20766785 AGCCGAAGCCCUUCGGCGCUAC--AUAU----AUUUGGUUCGAGUUUCUAGUUUCUAGGCCUUUUUAAUUUUUUCGUUCUCUAACAUUUAUUUUCCUU .((((((....)))))).....--....----.....(((.(((..(((((...)))))...................))).)))............. ( -13.10) >DroPse_CAF1 11185 93 - 1 AGCUUAAACCUUGAGGUUCUAUCUAUUUAUCUAAUUCGUUAGAGUUCGU--UCUAUAUGAUAU-UCUGUUUUUUUGUUUUUCAACAUUU--UAUCAUU ......((((....))))...........(((((....)))))......--.....((((((.-..((((............))))...--)))))). ( -8.40) >DroSec_CAF1 9403 91 - 1 AGCCGAAGCCCUUCGGCCCUAC--AUUU----AUUUGGUUCGAGUUUCUAGUUUCUAGGCCUU-UUACUUUUUUCGUUCCCUAACAUUUAUUUUCCUU .((((((....)))))).....--....----....((..((((.....(((...........-..)))...))))..)).................. ( -14.02) >DroSim_CAF1 10053 91 - 1 AGCCGAAGCCCUUCGGCCCUAC--AUUU----AUUUGGUUCGAGUUUCUAGUUUCUAGGCCUU-UUACUUUUUUCGUUCCCUAACAUUUAUUUUCCUU .((((((....)))))).....--....----....((..((((.....(((...........-..)))...))))..)).................. ( -14.02) >DroEre_CAF1 10025 88 - 1 AGCCGAAACACUUCGGCCCUAC--AUUU----AUUUGGUUCGAGU-UCUAGUUUCUAGGCCUU-UUACUUU-UUCGUUCCCUAACAU-UAUUUUCCUU .((((((....)))))).....--....----....(((..(((.-.((((...))))..)))-..)))..-...............-.......... ( -15.20) >DroYak_CAF1 11126 90 - 1 AGCCGAAACACUUCGGCCCUAC--AUUU----AUUUGGUUCGAGUUUCUAGUUUCUAGGCCUU-UAACUUUAUUCUUUACCUAACAU-UAUUUUCCUU .((((((....)))))).....--....----....(((..((((....((((..........-.))))..))))...)))......-.......... ( -13.50) >consensus AGCCGAAACCCUUCGGCCCUAC__AUUU____AUUUGGUUCGAGUUUCUAGUUUCUAGGCCUU_UUACUUUUUUCGUUCCCUAACAUUUAUUUUCCUU .((((((....)))))).............................(((((...)))))....................................... ( -8.70 = -8.23 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:07 2006