| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,843,300 – 11,843,403 |
| Length | 103 |
| Max. P | 0.990569 |
| Location | 11,843,300 – 11,843,403 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 81.33 |
| Mean single sequence MFE | -31.70 |
| Consensus MFE | -19.25 |
| Energy contribution | -21.59 |
| Covariance contribution | 2.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.80 |
| Structure conservation index | 0.61 |
| SVM decision value | 2.22 |
| SVM RNA-class probability | 0.990569 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11843300 103 - 20766785 CGG-----GUUGGUCUCGUUCCCAUUCGAA-CCGAACCGACCCAAUCCCUCUUCUAGUUACAUAUAUCGUCUAUGCAGAUCUCUUGAUCUCGACGUUGACAUAUAUACC .((-----((((((.((((((......)))-.)))))))))))..................((((((.(((.(((((((((....))))).).))).)))))))))... ( -31.40) >DroEre_CAF1 5988 93 - 1 GGGUUGGUGUUGGUCUGGUCCCC----GAACCCGAACCGACCCAAUCCCU----------CCUAUAUCGACUAUGCAGAUCUCUUGAUCUCGACGUUGACAU--AUACC (((((((.(((((((.(((....----..))).).)))))))))))))..----------..(((.(((((..((.(((((....)))))))..))))).))--).... ( -31.60) >DroYak_CAF1 7262 98 - 1 GGGUUGGUGUUGGUCUGGUCCCCAUUCGAA-CCGAACCGACCCAAUCCCA--------AACAAAUAUCGACUAUGCAGAUCUCUUGAUCUCGACGUUGACAU--AUACC (((((((.((((((.((((.(......).)-))).)))))))))))))..--------........(((((..((.(((((....)))))))..)))))...--..... ( -32.10) >consensus GGGUUGGUGUUGGUCUGGUCCCCAUUCGAA_CCGAACCGACCCAAUCCCU_________ACAUAUAUCGACUAUGCAGAUCUCUUGAUCUCGACGUUGACAU__AUACC (((((((.((((((.(((.............))).)))))))))))))..................(((((..((.(((((....)))))))..))))).......... (-19.25 = -21.59 + 2.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:06 2006