Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,841,171 – 11,841,270 |
Length | 99 |
Max. P | 0.836969 |
Location | 11,841,171 – 11,841,270 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 76.51 |
Mean single sequence MFE | -32.88 |
Consensus MFE | -25.61 |
Energy contribution | -24.28 |
Covariance contribution | -1.33 |
Combinations/Pair | 1.39 |
Mean z-score | -1.14 |
Structure conservation index | 0.78 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.836969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11841171 99 - 20766785 GGUGAACUUCAGCGAGGCCUUCUGCGCCCUCAUCCACGUCAAGGCGCUGCGCGUGUUUGUGGAAUCCGUGCUGAGGUAUAUCACCA-AGU-UAUUGCCAUA---- (((((((((((((((((.(......).)))).((((((..((.((((...)))).))))))))......))))))))...))))).-...-..........---- ( -37.00) >DroVir_CAF1 5760 89 - 1 GGUGAACUUCAGCGAGGCCUUCUGCGCCUUGAUACAUGUCAAAGCGCUGCGCGUUUUUGUGGAAUCCGUGCUGAGGUAGGCAAC------GCAU-C--------- ((((.(((((((((.((..(((.((((.(((((....))))).))))..((((....))))))).)).))))))))).(....)------.)))-)--------- ( -32.10) >DroGri_CAF1 5723 91 - 1 GGUGAACUUCAGCGAGGCUUUCUGCGCCUUGAUACACGUGAAAGCGUUGCGCGUGUUUGUGGAAUCCGUGCUGAGGUGCGUCCUCA----UCAU-C--------- ((((((((((((((.((..(((..((....(((((.((..(.....)..)).)))))))..))).)).)))))))))......)))----))..-.--------- ( -31.90) >DroEre_CAF1 3875 99 - 1 GGUGAACUUUAGCGAGGCCUUCUGUGCCCUCAUCCAUGUCAAGGCGCUGCGCGUGUUUGUGGAAUCCGUGCUGAGGUACACUAUCG-UAU-UGUGACCACC---- ((((.((((((((((((.(......).)))).((((((..((.((((...)))).))))))))......)))))))).(((.....-...-.)))..))))---- ( -31.80) >DroYak_CAF1 5111 100 - 1 GGUGAACUUCAGCGAGGCCUUCUGCGCCCUCAUCCACGUCAAGGCGCUGCGCGUGUUUGUGGAGUCCGUGCUGAGGUAGACUGUUUUUUU-UGUAACUGCC---- (((..((((((((((((.(......).)))).((((((..((.((((...)))).))))))))......))))))))..)))........-..........---- ( -31.90) >DroMoj_CAF1 5961 98 - 1 GGUGAACUUCAGCGAGGCUUUCUGCGCCUUGAUACACGUCAAAGCGCUGCGCGUUUUCGUGGAAUCUGUGCUGAGGUAUACAUU------GAAU-UUUACAGAGG .(((.(((((((((((((.......)))))(((.((((..(((((((...)))))))))))..)))...)))))))).)))...------....-.......... ( -32.60) >consensus GGUGAACUUCAGCGAGGCCUUCUGCGCCCUCAUACACGUCAAAGCGCUGCGCGUGUUUGUGGAAUCCGUGCUGAGGUACACAAUC______UAU_AC_AC_____ ((((.(((((((((.((..(((.((((.((...........))))))..((((....))))))).)).))))))))).))))....................... (-25.61 = -24.28 + -1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:05 2006