Locus 3542

Sequence ID 2R_DroMel_CAF1
Location 11,837,275 – 11,837,370
Length 95
Max. P 0.895894
window5769

overview

Window 9

Location 11,837,275 – 11,837,370
Length 95
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 79.31
Mean single sequence MFE -24.98
Consensus MFE -15.08
Energy contribution -15.63
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -2.20
Structure conservation index 0.60
SVM decision value 0.99
SVM RNA-class probability 0.895894
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11837275 95 + 20766785
UUUUCUUUAUCUAU-CUUAAUAGAUUCCUCUCCUAGCUGUUUACUCUGCAUGUGCGAGUAUCCGGCCAUGAUGGGGGACUAUAUAGAUGUACACUC
.......(((((((-....((((.((((((((...((((..(((((.((....)))))))..))))...)).)))))))))))))))))....... ( -29.30)
>DroSec_CAF1 881 93 + 1
UUUUGUUUCU--CU-UAUAAUAGAUUGCUCUCCUAGCUGUUUACUCUGCAUGUGCGAGUAUACGGCCAUGAUGGGGGACUAUAUAGAUGUACACUC
...(((...(--((-....((((.....((((((((((((.(((((.((....))))))).))))).....)))))))))))..)))...)))... ( -24.30)
>DroSim_CAF1 793 93 + 1
UUUUGUUUCU--CU-UAUAAUAGAUUGCUCUCCUAGCUGUUUACUCUGCAUGUGCGAGUAUACGGCCAUGAUGGGGGACUAUAUAGAUGUACACUC
...(((...(--((-....((((.....((((((((((((.(((((.((....))))))).))))).....)))))))))))..)))...)))... ( -24.30)
>DroEre_CAF1 1 72 + 1
------------------------UUCCUCUCCGUGCUGCUUACUCUGCAUGUGCGAGUAUCCGGCCAUGAUGGGGGACUAUAUAGAUGUACACUC
------------------------((((((..(((((((..(((((.((....)))))))..))).))))..)))))).................. ( -22.80)
>DroYak_CAF1 1214 96 + 1
UUUCAUUUUAAUAUCUUUAAUAGACUCUUCUCCGUGCUGCUUACUCUGCAUGUGCGAGUAUCCGGCCAUGAUGGGGGACUACAUAGAUGUACACUC
..........((((((....(((.((((..((...((((..(((((.((....)))))))..))))...))..)))).)))...))))))...... ( -25.40)
>DroAna_CAF1 1178 91 + 1
UUUAAUUUUU--AU---CUGCAGAUUCCUCGUCUUGCUGUUUACUCUGCAUGUGCGAGUAUCAGGAGAUGAUGGCCGACUACAUAGAUGUGCAUUC
..........--..---.((((.((((((((((((.(((..(((((.((....))))))).)))))))))).))...........))).))))... ( -23.80)
>consensus
UUUUAUUUCU__AU_U_UAAUAGAUUCCUCUCCUAGCUGUUUACUCUGCAUGUGCGAGUAUCCGGCCAUGAUGGGGGACUAUAUAGAUGUACACUC
............................((((((.((((..(((((.((....)))))))..))))......)))))).................. (-15.08 = -15.63 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:04 2006