Locus 3540

Sequence ID 2R_DroMel_CAF1
Location 11,831,833 – 11,831,935
Length 102
Max. P 0.715456
window5767

overview

Window 7

Location 11,831,833 – 11,831,935
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 86.21
Mean single sequence MFE -28.42
Consensus MFE -22.31
Energy contribution -22.20
Covariance contribution -0.11
Combinations/Pair 1.32
Mean z-score -2.38
Structure conservation index 0.78
SVM decision value 0.39
SVM RNA-class probability 0.715456
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11831833 102 - 20766785
AUCCUCCACUCCAGUGGCUGUUCCGAAUGCCUGGGGCGUAACAACCACGCCAUCGGGUUCGUUCAAUGACUCAUUUACUUCUCCAACCACUGGAAGCAGCAC
.........((((((((.((....(((((((((((((((.......))))).))))))..))))((((...))))........)).))))))))........ ( -31.20)
>DroSec_CAF1 22391 102 - 1
AUCCCCCACUCCAGUGGCCGUUCCGAAUGCCUGGGGAGUAACAACCACUCCAUCGGGUUCAUUCAAUGACUCAUUUACUUCUCCAUCCACUGGAAGCAUCAC
.........((((((((.......(((((((((((((((.......))))).)))))..)))))((((...))))...........))))))))........ ( -28.80)
>DroSim_CAF1 21234 102 - 1
AUCCCCCACUCCAGUGGCCGUUCCGAAUGCUUGGGGAGUAACAACCACUCCAUCGGGUUCAUUCAAUGACUCAUUUACUUCUCCAUCCACUGGAAGCAUCAC
.........((((((((.......(((((((((((((((.......))))).)))))..)))))((((...))))...........))))))))........ ( -26.00)
>DroEre_CAF1 22256 102 - 1
AUCGUCGACUCCAGUGGCCGUUCCGAAUGCCUGGGGAGUAACUACAACCCCAUCGAGUUCGUUCAAUGACUCAUUUACUUCGCCGACCACUGGAGGCAUCAC
........(((((((((.((...((((....(((((.((....))..)))))..(((((........)))))......)))).)).)))))))))....... ( -33.20)
>DroYak_CAF1 22580 102 - 1
AUCCUCCACUCCAGUGGCCGUUCCAAAUGCCUGGGGAGUAACUACAACCCCAUCGAGCUCAUUUAAUGACUCAUUUACUUCGCCGACCACUGGAAGCAUCAC
.........((((((((.((...........(((((.((....))..)))))..(((.((((...)))))))...........)).))))))))........ ( -27.30)
>DroAna_CAF1 21351 102 - 1
ACCCACCACUCCGGUGCCCGUGCCCAAUGCCUGGGGUGUGACCACUACGCCUUCCAGUUCAUUCAAUGACUCUUACACUUCCCCGACUACUGGAAGCAGCUC
...(((.(((((((.((...........))))))))))))........((((((((((..............................))))))))..)).. ( -24.01)
>consensus
AUCCUCCACUCCAGUGGCCGUUCCGAAUGCCUGGGGAGUAACAACCACCCCAUCGAGUUCAUUCAAUGACUCAUUUACUUCUCCAACCACUGGAAGCAUCAC
.........((((((((.((..(((......)))(((((.......)))))...(((.((((...)))))))...........)).))))))))........ (-22.31 = -22.20 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:02 2006