Locus 354

Sequence ID 2R_DroMel_CAF1
Location 2,326,473 – 2,326,565
Length 92
Max. P 0.612651
window703

overview

Window 3

Location 2,326,473 – 2,326,565
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 82.25
Mean single sequence MFE -19.43
Consensus MFE -13.06
Energy contribution -14.65
Covariance contribution 1.59
Combinations/Pair 1.12
Mean z-score -1.73
Structure conservation index 0.67
SVM decision value 0.16
SVM RNA-class probability 0.612651
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2326473 92 - 20766785
UGCACAAAUUACAAUUAAACGUUGUUUAACAACAAGUAAGAUUUAGUUAGGGCACUAACCCAGACGGAUAACGGCCCUAAUUGUUGGACAAG
((..(((.............((((.....))))..........((((((((((......((....))......)))))))))))))..)).. ( -20.80)
>DroSec_CAF1 98498 92 - 1
UGAACAAAUUACAAUUAAACGUUGUUUAACAACAAGUAAGAUUUAGUUAGGGCAUUGACCCAGACGGAUAAAGGCCCUAAUUGUUGGACAAG
.....................((((((((((..............((((((((......((....))......)))))))))))))))))). ( -20.73)
>DroSim_CAF1 93966 92 - 1
UGAACAAAUUACAAUUAAACGUUGUUUAACAACAAGUAAGAUUUAGUUAGGGCAUUGACCCAGACGGAUAAAGGCCCUGAUUGUUGGACAAG
.....................((((((((((..............((((((((......((....))......)))))))))))))))))). ( -20.83)
>DroEre_CAF1 91251 92 - 1
UGAACAAAUUACAAUUAAACGUUGUUUGACAACAAGUAAGAUUUAGUUAGGGCAUUGACCCAGACGGAUAAAGGCCCUAAUUGUUGGACAAG
.....................(((((..(((..............((((((((......((....))......)))))))))))..))))). ( -21.23)
>DroYak_CAF1 87661 92 - 1
UGAACAAAUUACAAUUAAACGUUGUUUGACAACAAUUAAGAUUUAGUUAGGGCAUUGACCCAGACGGAUAAAGGCCCUAAUUGAUAGACAAG
....................((((.....)))).........(((((((((((......((....))......)))))))))))........ ( -20.00)
>DroPer_CAF1 101462 74 - 1
UGAACAAAUUACAAUUA-ACGUUGUCCGACAACAAUUAUAAAUUGUUUGAGGCACACACAUGUUCGGUU-----------------CAUGUG
.((((((.(((.((((.-..((((.....)))))))).))).))))))........((((((.......-----------------)))))) ( -13.00)
>consensus
UGAACAAAUUACAAUUAAACGUUGUUUAACAACAAGUAAGAUUUAGUUAGGGCAUUGACCCAGACGGAUAAAGGCCCUAAUUGUUGGACAAG
....................((((.....))))..........((((((((((......((....))......))))))))))......... (-13.06 = -14.65 +   1.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:15 2006