Locus 353

Sequence ID 2R_DroMel_CAF1
Location 2,310,379 – 2,310,476
Length 97
Max. P 0.824429
window702

overview

Window 2

Location 2,310,379 – 2,310,476
Length 97
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 79.15
Mean single sequence MFE -24.34
Consensus MFE -14.67
Energy contribution -17.29
Covariance contribution 2.62
Combinations/Pair 1.08
Mean z-score -2.07
Structure conservation index 0.60
SVM decision value 0.69
SVM RNA-class probability 0.824429
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2310379 97 - 20766785
-----UCUUGCAUCUUCUGAUCCUUUUCUCCGUUCAGAGGAUGCGUGAGUAUUCGAUUCAUGAUGUUUCUUCGCCACAUGACCAAGCUAAAUGGCUAAGUUU
-----....(((((((((((.............)))))))))))((((((.....)))))).......(((.((((...(......)....)))).)))... ( -24.72)
>DroSec_CAF1 82878 101 - 1
-CGUUUCUUGCAUCUUCUGAUCCUUUUCUCCACUCAGAGGAUGCGUGAGUAUUCGAUUCAUGAUGUUUCUUCGCCACAUGACUAAGCUAAAUGGCUAAGUUU
-........(((((((((((.............)))))))))))(((.((....((..(.....)..))...)))))..((((.((((....)))).)))). ( -25.62)
>DroSim_CAF1 78046 101 - 1
-CGCUUCUUGCAUCUUCUGAUCCUUUUCUCCACUCAGAGGAUGCGUGAGUAUUCGAUUCAUGGCGAUUCUUCGCCACAUGACCAAGCCAAAUGACUAAGUUU
-.((((...(((((((((((.............)))))))))))((((((.....))))))(((((....)))))........))))............... ( -30.42)
>DroYak_CAF1 71554 91 - 1
UCGUUACUUGCAUCUUCUGAUCGUUUUCCCCACUCAAAGGA---UCG--------CCUAAUUGUGAUUCUUGGCUCUAUCAGCUAGCUAAAUGGCUAAGUUU
.....(((((((((....)))(((((..(.......(((((---(((--------(......)))))))))((((.....)))).)..))))))).)))).. ( -16.60)
>consensus
_CGUUUCUUGCAUCUUCUGAUCCUUUUCUCCACUCAGAGGAUGCGUGAGUAUUCGAUUCAUGAUGAUUCUUCGCCACAUGACCAAGCUAAAUGGCUAAGUUU
.....((.((((((((((((.............)))))))))))).)).........((((((((......)))..)))))...((((....))))...... (-14.67 = -17.29 +   2.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:14 2006