Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,802,022 – 11,802,142 |
Length | 120 |
Max. P | 0.778993 |
Location | 11,802,022 – 11,802,142 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -38.77 |
Consensus MFE | -37.20 |
Energy contribution | -37.53 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 0.96 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778993 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11802022 120 + 20766785 GAAAAACUCCUGAAGGAUGUGCCAGUGAAGCAGUCCGCAUUUACUCCGAUGCUGGAACUCUUCGUUCUGCUGCACAAAUACCAGGUGAAGCUUAGCGAGGAAACAUUUGAGCAGGUUAUG ........((((..((((((.((((((..(.(((........))).)..))))))...((((((((..(((.(((.........))).)))..)))))))).))))))...))))..... ( -34.30) >DroSec_CAF1 6116 120 + 1 GAACGACUCCUGAAGGAUGUGCCAGUGAAGCAGUCUGCAUUUACUCCGAUGUUGGAACUCUUCGUUCUGCUGCACAAAUAUCAGGUGCAGCUUAGCGAGGAAACAUUUGAGCAGGUGAUG ......(.((((..((((((....(((((((.....)).)))))((((....))))..((((((((..(((((((.........)))))))..)))))))).))))))...)))).)... ( -41.00) >DroSim_CAF1 6112 120 + 1 GAAAAACUCCUGAAGGAUGUGCCAGUGAAGCAGUCCGCAUUUACUCCGAUGCUGGAACUCUUCGUUCUGCUGCACAAAUACCAGGUGCAGCUUAGCGAGGAAACAUUUGACCAGGUGAUG ......(.((((..((((((.((((((..(.(((........))).)..))))))...((((((((..(((((((.........)))))))..)))))))).))))))...)))).)... ( -41.00) >consensus GAAAAACUCCUGAAGGAUGUGCCAGUGAAGCAGUCCGCAUUUACUCCGAUGCUGGAACUCUUCGUUCUGCUGCACAAAUACCAGGUGCAGCUUAGCGAGGAAACAUUUGAGCAGGUGAUG ........((((..((((((....(((((((.....)).)))))((((....))))..((((((((..(((((((.........)))))))..)))))))).))))))...))))..... (-37.20 = -37.53 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:40 2006