Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,801,262 – 11,801,382 |
Length | 120 |
Max. P | 0.509846 |
Location | 11,801,262 – 11,801,382 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -30.90 |
Consensus MFE | -29.28 |
Energy contribution | -29.28 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.95 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509846 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11801262 120 - 20766785 ACGAUUCCAUUGAUCAUAUCUCCAAUGGCAUCCAUGUCGGGAGUAAAGACAAUCCGACCAUCUUUCACAUCCGAUUCGACGACAAUAAUGGGAGCGGAUGCCAUAUCCGCAUCGCAAUGA ..(((.((((((..........)))))).)))((((((((..(((((((...........))))).))..))))).............((.(((((((((...))))))).)).))))). ( -30.30) >DroSec_CAF1 5396 120 - 1 ACAAUUCCAUUGAUCAUAUCGCCAAUGGCAUCCAUGUCGGGAGUAAAGACAAUCCGACCAUCUUUCACAUCCGAUUCGACGACAAUAAUGGGAGCGGAUGCCAUAUCCGCAUCGCAAUGA .......(((((.......((...(((((((((..((((((.((....))..))))))...........(((.(((..........))).)))..)))))))))...)).....))))). ( -30.30) >DroSim_CAF1 5392 120 - 1 ACAAUUCCAUUGAUCAUAUCGCCAAUGGCAUCCAUGUCGGGAGUAAAGACAAUCCGACCAUCUUUCACAUCCGAUUCGACGACAACAAUGGGAGCGGAUGCCAUAUCCGCAUCGCAAUGA ....((((((((........(((...))).((...(((((..(((((((...........))))).))..)))))..))......))))))))(((((((...))))))).......... ( -32.10) >consensus ACAAUUCCAUUGAUCAUAUCGCCAAUGGCAUCCAUGUCGGGAGUAAAGACAAUCCGACCAUCUUUCACAUCCGAUUCGACGACAAUAAUGGGAGCGGAUGCCAUAUCCGCAUCGCAAUGA .......(((((............(((((((((..((((((.((....))..))))))...........(((.(((..........))).)))..)))))))))..........))))). (-29.28 = -29.28 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:39 2006