Locus 3523

Sequence ID 2R_DroMel_CAF1
Location 11,798,807 – 11,798,927
Length 120
Max. P 0.835717
window5736

overview

Window 6

Location 11,798,807 – 11,798,927
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.61
Mean single sequence MFE -40.03
Consensus MFE -38.73
Energy contribution -39.07
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.97
SVM decision value 0.73
SVM RNA-class probability 0.835717
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11798807 120 + 20766785
CUUCUUCCGGAACUAUCUCGAAUGGAAUGCCACGGUGCGUAACCGUUUCUGUUCCAGCAUGGACAGAUUCCUGGCAUUUCUCAGCGGAAUGCACCAUCAAAUCUCUGGGAUGUCCGUGAU
.....((((((..(((((((..(((((((..(((((.....)))))...)))))))(.((((.(((....)))(((((((.....))))))).))))).......))))))))))).)). ( -38.10)
>DroSec_CAF1 2922 120 + 1
CUUCUUCCGGAACUAUCUCGAAUGGAAUGCCACGGUGCGGAACCGUUUCUGUUCCAGCAUGGACAGAUUCCUGGCAUUUCUCAGCGGAAUGCACCAUCAAAUCGCUGGGAUGUCCGUGAU
.....((((((..((((((....(((((((((((((.....))))).(((((((......))))))).....))))))))..(((((..((......))..))))))))))))))).)). ( -41.00)
>DroSim_CAF1 2926 120 + 1
CUUCUUCCGGAACUAUCUCGAAUGGAAUGCCACGGUGCGAAACCGUUUCUGUUCCAGCAUGGACAGAUUCCUGGCAUUUCUCAGCGGAAUGCACCAUCAAAUCGCUGGGAUGUCCGUGAU
.....((((((..((((((....(((((((((((((.....))))).(((((((......))))))).....))))))))..(((((..((......))..))))))))))))))).)). ( -41.00)
>consensus
CUUCUUCCGGAACUAUCUCGAAUGGAAUGCCACGGUGCGAAACCGUUUCUGUUCCAGCAUGGACAGAUUCCUGGCAUUUCUCAGCGGAAUGCACCAUCAAAUCGCUGGGAUGUCCGUGAU
.....((((((..((((((....(((((((((((((.....))))).(((((((......))))))).....))))))))..(((((..((......))..))))))))))))))).)). (-38.73 = -39.07 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:34 2006