Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,798,215 – 11,798,335 |
Length | 120 |
Max. P | 0.500000 |
Location | 11,798,215 – 11,798,335 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.67 |
Mean single sequence MFE | -30.86 |
Consensus MFE | -28.50 |
Energy contribution | -28.72 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.06 |
Mean z-score | -1.45 |
Structure conservation index | 0.92 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11798215 120 - 20766785 GUUAGAUGCUCAUCUUCUACAGCGCUGGAGGAGGCCAUUUCACCGAGUUUUUACUCACCAAAAUUACAGAAAACUUAACAAAAAUCCAUGGCAACCGGAAGCCGGCCUUUCCGUUACUUU ((.((((....))))...))......((((.(((((........((((....)))).................................(((........))))))))))))........ ( -25.60) >DroSec_CAF1 2327 120 - 1 GUUAGAUGCUCAUCUUCUACAGCGCUGGAGGAGGCCAUUUCACGGAGUUUUCACUCACCAAACGUAUAGAAAACUUUAUGAAAAUCCAUGGCAACCGGAAGCCGGCCUUACCGUUACUUU ((.((((....))))...))......((..((((((.(((((..((((((((................))))))))..)))))......(((........))))))))).))........ ( -32.49) >DroSim_CAF1 2335 119 - 1 GUUAGAUGCUCAUCUUCUACAGCGCUGGAGGAGGCCAUUUCACGAAGUUUUCAUUCGC-AAAAGUACAGAAAACUUUAUGAAAAUCCAUGGCAACCGGAAGCCGGCCAUAUCGUUACUUU ((..((((....(((((((......)))))))((((.(((((..((((((((....((-....))...))))))))..)))))......(((........))))))).))))...))... ( -34.50) >consensus GUUAGAUGCUCAUCUUCUACAGCGCUGGAGGAGGCCAUUUCACGGAGUUUUCACUCACCAAAAGUACAGAAAACUUUAUGAAAAUCCAUGGCAACCGGAAGCCGGCCUUACCGUUACUUU ....((((....(((((((......)))))))((((.(((((..((((((((................))))))))..)))))......(((........)))))))....))))..... (-28.50 = -28.72 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:33 2006