Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,309,064 – 2,309,165 |
Length | 101 |
Max. P | 0.563781 |
Location | 2,309,064 – 2,309,165 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 87.03 |
Mean single sequence MFE | -23.12 |
Consensus MFE | -18.32 |
Energy contribution | -19.36 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.50 |
Structure conservation index | 0.79 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563781 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2309064 101 - 20766785 CAAACUUUCGCCUAAUCAACGAGCUACGUCCACUUACCCCUGGCUCCAACUCGAAAGGAGCUCGCUCCAACGCUCCCAAAAGCGGAUUUCGAGUGCCUCGC .........((.........((((((.(..........).))))))..((((((((((((....))))..((((......))))..))))))))))..... ( -27.00) >DroSec_CAF1 81566 101 - 1 CAAACUUUCGCUUAAUCAACGAGCUACGUCCACUUACCCCUGGCUCCAACUCGAAAGGAGCUCGCUCCAACGCUCCCAAAAGCGGAUUUCGAGUGCCUCGC .........((.........((((((.(..........).))))))..((((((((((((....))))..((((......))))..))))))))))..... ( -27.40) >DroSim_CAF1 76713 101 - 1 CAAACUUUCGCUUAAUCAACGAGCUACGUCCACUUACCCCUGGCUCCAACUCGAAAGGAGCUCGCUCCAACGCUCCCAAAAGCGGAUUUCGAGUGCCUCGC .........((.........((((((.(..........).))))))..((((((((((((....))))..((((......))))..))))))))))..... ( -27.40) >DroEre_CAF1 74081 83 - 1 CAAACUUUCGCUUAAUCAACG------------------CCGGAUCCAACUCGCAAAGAGCUCGCUCCAACGCUCCCAAAAGCGGAUUUCGAGUGCCACGC ........(((((((((....------------------..(((.(...(((.....)))...).)))..((((......))))))))..)))))...... ( -15.70) >DroYak_CAF1 70247 101 - 1 CAAACUUUCGCUUAAUCAACGAGUUACGUUCACUUAUCCCCGGCUCCAACUCGAAAAGAGCUCGCUUAAACGCCCUCAAAAGCGGAUUCCGAGUGCCACGC .........((......((((.....))))...........(((....(((((....(((..(((((............)))))..)))))))))))..)) ( -18.10) >consensus CAAACUUUCGCUUAAUCAACGAGCUACGUCCACUUACCCCUGGCUCCAACUCGAAAGGAGCUCGCUCCAACGCUCCCAAAAGCGGAUUUCGAGUGCCUCGC .........................................(((....((((((((((((....))))..((((......))))..))))))))))).... (-18.32 = -19.36 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:13 2006