Locus 3519

Sequence ID	2R_DroMel_CAF1
Location	11,790,666 – 11,790,780
Length	114
Max. P	0.645365

overview

Window 0

Location	11,790,666 – 11,790,780
Length	114
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	86.55
Mean single sequence MFE	-26.78
Consensus MFE	-19.75
Energy contribution	-19.75
Covariance contribution	0.00
Combinations/Pair	1.21
Mean z-score	-1.61
Structure conservation index	0.74
SVM decision value	0.23
SVM RNA-class probability	0.645365
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11790666 114 - 20766785
GUCACUAUUCCUUGAUUCAUUUCUUCGGGAUUCGGUAGUUUCGGAUCUUCUGGAUCUAUCUUGUUUUCCAUUGUUGGCAAGACCUGAUGACCUGCGAUCAUUUCUACUCGACCG
(((.....((((.((......))...))))...(((((.....((((....((.((.(((..((((((((....))).)))))..)))))))...))))....))))).))).. ( -26.60)
>DroSec_CAF1 11048 114 - 1
GUCACUAUCCCUUGGUUCAUUUCUUUGGGAUUCGAUAGUUUCGGAUCUUCUGGAUCUAUCUUGUUUUCCAUUUUUGGCAGGACCAGAUGACCUGCGAUCAUUUCUACUCGACCG
......(((((..((.......))..)))))(((((((.....((((....((.((.((((.((((((((....))).))))).))))))))...))))....))).))))... ( -29.20)
>DroSim_CAF1 12079 114 - 1
GUCACUAUCCCUUGGUUCAUUUCUUUGGGAUUCGGUAGUUUCGGAUCUUCUGGAUCUAUCUUGUUUUCCAUUUUUGGCAGGACCAGAUGACCUGCCAUCAUUUCUACUCGACUG
(((...(((((..((.......))..)))))..(((((..(((((((.....)))))((((.((((((((....))).))))).)))))).))))).............))).. ( -31.60)
>DroEre_CAF1 11113 114 - 1
GUUACUAUGUCUUCUUUCAUUUUUUAGCGAAUCGAGAGUUUCGGAACCUCUGGACCUAUCUUGUUUUCCAUUUUUGGUAAAACUAGAUGACCCGCGAUCAUUUUUACCCGUUCU
..........................(((..((.((((.........)))).))..(((((.((((((((....))).))))).)))))...)))................... ( -19.70)
>consensus
GUCACUAUCCCUUGGUUCAUUUCUUUGGGAUUCGAUAGUUUCGGAUCUUCUGGAUCUAUCUUGUUUUCCAUUUUUGGCAAGACCAGAUGACCUGCGAUCAUUUCUACUCGACCG
(((..................(((..(((((((((.....)))))))))..)))..(((((.((((((((....))).))))).)))))....................))).. (-19.75 = -19.75 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:28 2006