Locus 3518

Sequence ID 2R_DroMel_CAF1
Location 11,788,603 – 11,788,719
Length 116
Max. P 0.530708
window5729

overview

Window 9

Location 11,788,603 – 11,788,719
Length 116
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 81.32
Mean single sequence MFE -27.30
Consensus MFE -14.94
Energy contribution -16.17
Covariance contribution 1.23
Combinations/Pair 1.10
Mean z-score -2.50
Structure conservation index 0.55
SVM decision value -0.01
SVM RNA-class probability 0.530708
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11788603 116 + 20766785
AUCAAACUGUGCCUCCCGCCCACGGUAACUACUACCAACCGCAUCAUGUCGAUCAGAAUGCCAGGAACUAUUCUCGAUCAGCUCCACCAGACGCUCCAUAUGAUGAAACGGUUUAC
...(((((((.............((((.....)))).....((((((((.((((((((((........)))))).))))(((((.....)).)))..))))))))..))))))).. ( -27.40)
>DroEre_CAF1 8981 116 + 1
AUCAUACUGUACUUCCCACCCAGGGAAACUACUACCAAAUGCAACUUGUCGAUCAGAAUCCCACGAACUAUUCUCGAACAGCUCCUCCAGGAGCUCCUCAUGAAGAAUCAACUUAC
.((((...(((.(((((.....)))))..)))...........................................((..((((((....))))))..))))))............. ( -20.10)
>DroYak_CAF1 8980 116 + 1
AUCAUACUGUAUUUCCCACACAUGGGAACUACUACCAACCGCAGCUUGUCGAUCACAAUCCUGCGAACUAUUCUCGAUCAGCUCCUGCAGGAGCUCCUUGCGAAGAAUCGGUUUAC
........(((.((((((....)))))).))).(((...(((((.((((.....))))..)))))....(((((((...((((((....)))))).....)).))))).))).... ( -34.40)
>consensus
AUCAUACUGUACUUCCCACCCACGGAAACUACUACCAACCGCAACUUGUCGAUCAGAAUCCCACGAACUAUUCUCGAUCAGCUCCUCCAGGAGCUCCUUAUGAAGAAUCGGUUUAC
........(((.((.((......)).)).)))....(((((...(((...(((((((((..........))))).))))((((((....)))))).......)))...)))))... (-14.94 = -16.17 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:27 2006