| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,784,642 – 11,784,759 |
| Length | 117 |
| Max. P | 0.522165 |
| Location | 11,784,642 – 11,784,759 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.13 |
| Mean single sequence MFE | -35.45 |
| Consensus MFE | -23.22 |
| Energy contribution | -24.58 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11784642 117 + 20766785 ---UAAUUAGUACUCACUUGUCACAGCGAUGUGACGAUUGGAUUUGCCCUCCUCGAUCACCUCGAAAACAUCCUCCGGCGACGAGACGAACCGUUCCGUAGCGCCCUUGACGUACGGCAC ---..........(((.((((((((....)))))))).)))...((((....((((.....))))..((.((....(((((((..(((...)))..)))..))))...)).))..)))). ( -30.90) >DroVir_CAF1 4868 116 + 1 ---UAU-CUCUACUUACUUGUCACGGCAAUGUGACGAUUGGAUUUGCCCUCUUCGAUCACCUCAAAGACGUCCUCGGGCGAGGAGACAAAACGCUCCGUGGCACCCUUGACAAAGGGUAC ---...-............(((((((....(((((((..((......))...))).))))..........(((((....)))))...........)))))))((((((....)))))).. ( -35.30) >DroGri_CAF1 5278 113 + 1 ---AA----UUGCUCACUUGUCACCGCAAUGUGGCGAUUGGAUUUGCCCUCCUCGAUCACCUCGAAGACCUCCUCGGGCGAGGAGACGAAUCGCUCUGUGGCGCCCUUGACAUAGGGCAC ---((----((((.(((((((....)))).))))))))).((((((..(((((((.....(((((.(....).)))))))))))).))))))((((((((..........)))))))).. ( -43.50) >DroWil_CAF1 11660 116 + 1 ---AAACUUG-ACUUACUUGUCACUGCAAUAUGCCGAUUGGAUUUACCCUCCUCGAUAACCUCGAAAACAUCUUCGGGUGAUGAGACAAAUCGCUCGGUUGCACCUUUCACAUAAGGCAC ---.....((-((......)))).((((((..((.((((((......))..((((...(((.((((......)))))))..))))...))))))...))))))((((......))))... ( -28.30) >DroMoj_CAF1 5272 114 + 1 ---GAU---CUACUUACUUGUCACGGCAAUGUGGCGAUUGGAUUUGCCCUCCUCGAUCACCUCGAACACAUCCUCGGGCGAGGAAACAAAACGCUCCGUGGCGCCCUUGACGAAGGGCAC ---...---..........(((((((...((((((((......))))).((((((.....(((((........)))))))))))......)))..)))))))((((((....)))))).. ( -40.50) >DroAna_CAF1 5238 120 + 1 AAGAGAUAUGAACUCACUUGUCACAGCAAUGUGACGAUUGGAUUUUCCCUCCUCGAUCACUUCGAAGACAUCCUCCGGGGAUGAGACGAACCUCUCAGUGGCACCCUUGACAUAGGGCAC ..((((...(((..((.((((((((....)))))))).))..)))....((.((((.....)))).))(((((.....))))).........)))).(((...((((......))))))) ( -34.20) >consensus ___AAA__UGUACUCACUUGUCACAGCAAUGUGACGAUUGGAUUUGCCCUCCUCGAUCACCUCGAAGACAUCCUCGGGCGAGGAGACAAAACGCUCCGUGGCACCCUUGACAUAGGGCAC .............(((.((((((((....)))))))).)))...((((((..((((.....))))..........(((((.((((........))))....))))).......)))))). (-23.22 = -24.58 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:26 2006