Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,782,148 – 11,782,241 |
Length | 93 |
Max. P | 0.828314 |
Location | 11,782,148 – 11,782,241 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 77.72 |
Mean single sequence MFE | -42.70 |
Consensus MFE | -27.57 |
Energy contribution | -26.82 |
Covariance contribution | -0.74 |
Combinations/Pair | 1.39 |
Mean z-score | -1.62 |
Structure conservation index | 0.65 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828314 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11782148 93 - 20766785 ACAGGCACAGAUCGCCAAGCCGAUCCGGUCCGGCCAGGGUGCAAUCGCCAUUCGUGGUGGUGGCGCCGUUGGAG------GACCAUCCCCGCUGGCCCA ...(((.(((((((......))))).(((((..(((((((((.(((((((....))))))).))))).)))).)------))))........))))).. ( -43.50) >DroPse_CAF1 2797 91 - 1 GCAGGCACAAAUCGCCAAGCCCAUUAGAGCGGGACAGGGCGCCAUUGCCAUACGAGGCGGUGGCGCUGUCGGCG------GAGCUCCAUUGCAGACC-- ((((.......(((((..((((........))).)..((((((((((((......))))))))))))...))))------).......)))).....-- ( -40.04) >DroEre_CAF1 2522 93 - 1 ACAGGCACAGAUCGCCAAGCCGAUCCGCGCCGGCCAGGGUGCAAUCGCCAUUCGUGGUGGUGGCGCCGUCGGCG------GACCAUCUCCACUGGCCCA ...(((.(.(((((......))))).).)))(((((((((((.(((((((....))))))).)))))......(------((.....))).)))))).. ( -45.40) >DroYak_CAF1 2528 93 - 1 ACAGGCACAGAUCGCCAAGCCGAUCCGCGCCGGCCAGGGUGCAAUUGCAAUUCGUGGUGGUGGCGCCGUUGGCG------GACCAUCCCCGCUGGCCCA ...(((.(.(((((......))))).).)))(((((((((((....)).))))((((.(((((..(((....))------).))))).))))))))).. ( -41.60) >DroAna_CAF1 2572 99 - 1 CCAAGCGCAAAUCGCCAAGCCGAUUCGCGCUGGCCAGGGUGCGAUCGCUAUCCGAGGUGGUGGUGCCGUUGGAGGUGCAGGAGCAGCGCCGCUGGCUCC ...(((((.(((((......))))).)))))(((((((((((...((((((.....))))))(..((......))..).......))))).)))))).. ( -45.60) >DroPer_CAF1 2582 91 - 1 GCAGGCACAAAUCGCCAAGCCCAUUAGAGCGGGACAGGGCGCCAUUGCCAUACGAGGCGGUGGCGCUGUCGGCG------GAGCUCCAUUGCAGACC-- ((((.......(((((..((((........))).)..((((((((((((......))))))))))))...))))------).......)))).....-- ( -40.04) >consensus ACAGGCACAAAUCGCCAAGCCGAUCCGCGCCGGCCAGGGUGCAAUCGCCAUUCGAGGUGGUGGCGCCGUCGGCG______GACCAUCACCGCUGGCCCA ...(((.(.(((((......))))).).)))(((((((((((.((((((......)))))).)))))...((................)).)))))).. (-27.57 = -26.82 + -0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:25 2006