| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,770,997 – 11,771,090 |
| Length | 93 |
| Max. P | 0.614341 |
| Location | 11,770,997 – 11,771,090 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 81.71 |
| Mean single sequence MFE | -23.50 |
| Consensus MFE | -15.19 |
| Energy contribution | -16.20 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.614341 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11770997 93 + 20766785 AAACCCCCAUUCAAUAUGGGCAACUUUUUGAAUUAGUUGCGUAAAGUGAGAAAUGGCAA-AAUACUU----------UCAGUUCACAUGCAAGUUGGGAAUAAA .....(((((((((...((....))..)))))....((((((...(((((...(((...-.......----------))).)))))))))))..))))...... ( -20.30) >DroSec_CAF1 15738 102 + 1 AAAC--CCAUUCAAUAUGGGCAACUUUUUGAAUUAGUUGCGUAAAGUGUUAAUUGGCAACAGUACUUAGGUAUGUACUCAGUUCACAUGCAAGUUGGGAAUAAA ...(--((((((((...((....))..)))))....((((((...(((.....((....))((((........))))......)))))))))..))))...... ( -23.60) >DroSim_CAF1 15074 102 + 1 AAAC--CCAUUCAAUAUGGGCAACUUUUUGAAUUAGUUGCGUAAAGUAUGAAUUUGAAACAGUACUUAGGUAUGUACUCAGUUCACAUGCAAGUUGGGAAUAAA ...(--(((.......((.((((((.........)))))).))..(((((....((((..(((((........)))))...)))))))))....))))...... ( -25.20) >DroEre_CAF1 15316 101 + 1 AAGC--CCAUUCAAUAUGGGUAACUUUUUGAAUUAGUUGCGCAAAGUGUGAAUUGGCAACAUUAAUUUGGUCUGUACUCAGCUCACAUAAAUUGUAGGAGUU-G ..((--((((.....)))))).((...(..((((((((((.(((........))))))))..)))))..)...))...(((((((((.....)))..)))))-) ( -25.30) >DroYak_CAF1 16516 102 + 1 AAAC--CCGUUCAGUAUGGGUAACUUUUUGAAUUAGUUGCGUAAAGUGUGAAUUGGUAGCAGUAAUUUGUUCUGUACUCAGCUCACAUUAAUUGUAGGAAUAAA ..((--((((.....))))))...............(((((...(((((((.((((((.(((.........)))))).))).)))))))...)))))....... ( -23.10) >consensus AAAC__CCAUUCAAUAUGGGCAACUUUUUGAAUUAGUUGCGUAAAGUGUGAAUUGGCAACAGUACUUAGGUAUGUACUCAGUUCACAUGCAAGUUGGGAAUAAA ........((((....((.((((((.........)))))).))..(((((((((((..(((...........)))..))))))))))).........))))... (-15.19 = -16.20 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:24 2006