Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,768,197 – 11,768,287 |
Length | 90 |
Max. P | 0.973623 |
Location | 11,768,197 – 11,768,287 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 94.89 |
Mean single sequence MFE | -19.60 |
Consensus MFE | -17.48 |
Energy contribution | -17.44 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.16 |
Mean z-score | -1.69 |
Structure conservation index | 0.89 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11768197 90 - 20766785 CAACUUUAUGCAAAUUCCUAAUAGGCAUUUCCAUUUUCCACUUUGAAAUGCAAAGCUUUUGAAACAACAAGCAGCUGAAUUGGUGUCCUU .......((((.(((((.......(((((((.............)))))))..((((((((......)))).))))))))).)))).... ( -15.22) >DroSec_CAF1 12963 90 - 1 CAGCUUUAUGCAAAUUCCUAAUAGGCAUUUCCAUUUUCCACUUUGAAAUGCAAAGCUUUUGGAACAACAAGCAGCUGAGCUGGUGUCCUU ((((((..(((...((((....((((.(((.((((((.......)))))).)))))))..))))......)))...))))))........ ( -21.10) >DroSim_CAF1 12311 90 - 1 CAGCUUUAUGCAAAUUCCUAAUAGGCAUUUCCAUUUUCCACUUUGAAAUGCAAAGCUUUUGGAACAACAAGCAGCUGAGCUGGUGUCCUU ((((((..(((...((((....((((.(((.((((((.......)))))).)))))))..))))......)))...))))))........ ( -21.10) >DroEre_CAF1 12444 90 - 1 CAGCUUUAUGCAAAUUCCUUAUAGGCAUCUCCACUUUCCACUUUGAAAUGCAAAGAUUUUGGAACAACAAGCAGCUGAGCUGGUGUCCUU ((((((..(((............((.....))...((((((((((.....)))))....)))))......)))...))))))........ ( -19.80) >DroYak_CAF1 13437 90 - 1 CAGCUUUAUGCAAAUUCCUUAUAGGCAUUUCCAUUUUCCACUUUUAAAUGCAAAGCUUUUGGAACAACAGGCAGCUAAGCUGGUGUCCUU ((((((..(((...((((....((((.(((.(((((.........))))).)))))))..))))......)))...))))))........ ( -20.80) >consensus CAGCUUUAUGCAAAUUCCUAAUAGGCAUUUCCAUUUUCCACUUUGAAAUGCAAAGCUUUUGGAACAACAAGCAGCUGAGCUGGUGUCCUU ((((((..(((.............(((((((.............))))))).......(((......))))))...))))))........ (-17.48 = -17.44 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:20 2006