Locus 3512

Sequence ID 2R_DroMel_CAF1
Location 11,758,996 – 11,759,098
Length 102
Max. P 0.754603
window5721

overview

Window 1

Location 11,758,996 – 11,759,098
Length 102
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 76.26
Mean single sequence MFE -39.38
Consensus MFE -25.73
Energy contribution -25.15
Covariance contribution -0.58
Combinations/Pair 1.32
Mean z-score -1.37
Structure conservation index 0.65
SVM decision value 0.48
SVM RNA-class probability 0.754603
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11758996 102 + 20766785
------UCUA----------U-AGAUACUCACUUCAUCUCCAGCUUCGCGAGGCGCUGCUUGAUCUUGGCCUGGCUUGCCGUGUACUCAGCCAGGAGGCGGGCCAGCCGCAUGUUGAGG
------....----------.-.....((((..(((....((((.((....)).))))..)))....(((.(((((((((.((........))...))))))))))))......)))). ( -34.30)
>DroVir_CAF1 206 104 + 1
------UUAAGUCACA---------AACUCACUUGAGCUCCAGCUUGGCCAGGCGCUGUUUGAUUUUGGCCUGGCUGGCCGUGUACUCGGCAAGCAGGCGGGCCAGUCGCAUGUUCAAG
------..........---------......(((((((.((((((.(((((((..(.....)..))))))).))))))..(((.(((.(((..(....)..)))))))))..))))))) ( -39.60)
>DroGri_CAF1 5300 102 + 1
------UUAAGGC--C---------AACUCACUUGAGCUCCAGUUUGGCCAGACGCUGCUUGAUUUUGGCCUGACUGGCCGUAUAUUCGGCCAACAGACGGGCCAGACGCAUGUUGAGG
------....(((--(---------(((((....))).......)))))).((((.(((.....(((((((((..((((((......)))))).....))))))))).))))))).... ( -38.01)
>DroWil_CAF1 2118 108 + 1
ACAUUAGGAA----------U-UGUCACUUACUUCAUUUCCAGUUUGGCCAGGCGCUGUUUGAUUUUGGCCUGACUGGCCGUAUACUCGGCCAAGAGGCGUGCCAAACGCAUAUUGAGG
......((((----------.-((..........)).)))).((((((((((((...)))))......((((...((((((......))))))..))))..)))))))........... ( -34.10)
>DroMoj_CAF1 4180 112 + 1
------AUGAGCCGAAUGGCU-GGCUACUCACUUGAGCUCCAGCUUGGCCAGACGCUGCUUGAUUUUGGCCUGGCUGGCCGUGUACUCGGCCAGCAGGCGCGCCAGUCGCAUGUUCAGG
------.(((((....(((((-(((..(((....))).....(((((((((((..(.....)..)))))))..((((((((......))))))))))))..))))))))...))))).. ( -51.50)
>DroAna_CAF1 5240 103 + 1
------UCUA----------UGCGGUACUCACUUCAUCUCCAGCUUGGCCAGUCGCUGCUUGAUCUUGGCCUGGCUGGCGGUGUAUUCCGCCAGAAGGCGCGCCAGUCGCAUGUUCAGG
------..((----------(((((.........((((.((((((.(((((((((.....))))..))))).)))))).)))).....((((....))))......)))))))...... ( -38.80)
>consensus
______UUAA__________U__G_UACUCACUUCAGCUCCAGCUUGGCCAGGCGCUGCUUGAUUUUGGCCUGGCUGGCCGUGUACUCGGCCAGCAGGCGGGCCAGUCGCAUGUUCAGG
...............................((((((((.(((((.(((((((..(.....)..))))))).)))))((((......)))).)))..(((.......)))....))))) (-25.73 = -25.15 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:19 2006