| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,757,081 – 11,757,184 |
| Length | 103 |
| Max. P | 0.722210 |
| Location | 11,757,081 – 11,757,184 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.21 |
| Mean single sequence MFE | -26.70 |
| Consensus MFE | -16.49 |
| Energy contribution | -17.52 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.722210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11757081 103 - 20766785 ------------AUGAAGGGG--UCGGCGGGGGGUGUCGAAAAAUGACUGACAAUAAAAUGUUGACGCAGCCAAGGAGCAUUAUGGAU--ACAGGGUGCUCGAAGGCGAAUGGAUUAAG ------------......(.(--((((((.....(((((.........)))))......))))))).).(((...((((((..((...--.))..))))))...)))............ ( -30.10) >DroPse_CAF1 1473 101 - 1 ------------ACGACGGGGUGCCUGCCGG------UAGAAAAUGACUGACAAUAAAAUGUUGACGCAGUCAAAGAGCAUUAUGAAUAUACAGGGGGACUCAAAGCGAUUGGAUUAAG ------------.((...((((.(((.((.(------((.....((((((.((((.....))))...)))))).....(.....)....))).)))))))))....))........... ( -20.10) >DroSec_CAF1 1844 103 - 1 ------------AUGAAGGGG--ACGGCGGGGGGUGUCGGAAAAUGACUGACAAUAAAAUGUUGACGCAGCCAAAGAGCAUUAUGGAU--ACAGGGUGCUCGAAGGCGAUUUGAUUAAG ------------......(.(--.(((((.....((((((.......))))))......))))).).).(((...((((((..((...--.))..))))))...)))............ ( -29.00) >DroEre_CAF1 1136 104 - 1 ------------GUGAGGGGG-GCUGGCGGGGGGUGUCGGAAAAUGACUGACAAUAAAAUGUUGACGCAGCCAACGAGCAUUAUGGAU--ACAGGGUGCUCGAAGGCGAUUGGAUUAAG ------------.......(.-(..((((.....((((((.......))))))......))))..).).(((..(((((((..((...--.))..)))))))..)))............ ( -30.90) >DroYak_CAF1 2250 116 - 1 UGGAGGGACGGUGUGCGGGGG-GUGUGCGGGGAGUGUCGGAAAAUGACUGACAAUAAAAUGUUGACGCAGCCAAAGAGCAUUAUGAAU--ACAGGGUGCUCGAAGGCGAUUGGAUUAAG ....((..((((.(((...((-.(((((((.(..((((((.......))))))......).))).)))).))...((((((..((...--.))..))))))....)))))))..))... ( -29.90) >DroAna_CAF1 3217 89 - 1 ----------------------------GGGGUGUGCUGGAAAAUGACUGACAAUAAAAUGUUGACGCAGCCAAAGAGCAUUAUGGAU--ACAGGGUGCUCGAAGGCGAUUGGAUUAAG ----------------------------...((((...(........).((((......)))).)))).(((...((((((..((...--.))..))))))...)))............ ( -20.20) >consensus ____________AUGAAGGGG__CCGGCGGGGGGUGUCGGAAAAUGACUGACAAUAAAAUGUUGACGCAGCCAAAGAGCAUUAUGGAU__ACAGGGUGCUCGAAGGCGAUUGGAUUAAG ..........................(((......((((.....)))).((((......))))..))).(((...((((((..((......))..))))))...)))............ (-16.49 = -17.52 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:18 2006